Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05137 ATGTCACCAAGTTTCATCTTCGATCCTCCCAGTGACGAAGAAATCGAATTCTCCGAACACGAATCAGATGAAGAAGAACAATCAGAACAAGAACAACAATCTGAATCAGAAGGAGGagaatcagaatcagaagaTGAACGCATAGAACAACGAGTTTCAAAGAAGAAAACAGTTTCTCCATGGGATTTCACCAAATACTCTGAATCAGTTGCTGAAGAACACGCTCGCAGAAGTACAACATCAGTAGATGATAAAATTTATGCCGTTAGAAAACGTTCAGCGCCGGTTGTTGCTTTGCCTGACTCCGACGATGAAAGTAGCTCCGACGCTGAAGATGATAAACAAGAAGATTATAGaccagaagaagaagatgaagaagagggTAATGCTGGTGACAAAAAGTCCTTTTTTGCTCCTTCTGATGGAACATCTTTCAGTGCTGATTCGTTCATGCAACTCAATTTGTCTCGCCCATTACTCAGGGCTTGTGAGGCCTTGGGGTTTACTAAACCAACACCAATTCAGGCGGCTTGTATACCATTAGCATTGACTGGTCGTGATATATGTGGAAGTGCGATTACTGGATCGGGAAAGACTGCTGCATTTGCACTACCTACTTTAGAGAGGTTGCTGTACCGTCCAAAACGCATGAATGCAATAAGGGTCCTAATTCTTACTCCAACCAGAGAGTTGGCAGCCCAAGTTCACAGTATGATTATGACGCTTGCTAAACATACTGATATAAGGTGTTGCCTGATTGTTGGTGGTCTGTCAACAAAGGAGCAAGAGGCTGCCTTGAGAACAATGCCAGACATTGTTGTGGCTACTCCAGGGCGCATGATAGACCATTTACGCAATTCTATGTCAGTGGATTTGGATGATCTTTCTGTTTTGATCCTTGATGAAGCAGACCGTCTTTTGCAGCTGGGATTTAGTGCTGAAATTCAGGAACTTGTTCGATTGTGTCCCAAAAAAAGGCAGACCATGCTTTTTTCAGCAACCATGACCGAGGAGGTTAATGATCTTGTTAAACTTTCCTTATCAAAACCCCTGCGTCTTTCTGCTGATCCATCTGCAAAACGGCCAGCAGCCTTGACTGAGGAGGTGGTTAGATTAAGAAACATGCGTGAAGTGAATCAGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTTACTTCAAAAGTTATCATTTTCAGTGGAACCAAGCAAGCTGCACATAGGTTGAGGATTATATTTGGATTAGCTGGATTGAAAGCTGCTGAGTTTCATGGAAATCTTACTCAGGCTCAACGTCTTGATGCTTTGGAGCAATTCAGGAAGCAGCAAGTGGATTTTTTGATTGCAACTGATGTGGCTGCTCGTGGGCTTGACATTATTGGTGTTCAAACAGTTATCAATTTTGCATGTCCACGCGATCTCACCAGCTATGTTCATCGAGTGGGTCGTACTGCAAGAGCTGGAAGAGCGGGATCTGCTATTACATTTGTTACCGATCGTGACCGATCACTTTTAAAAGCTATTataaAAAGGGCTGGTTCAAAGCTGAAAAAACGCACTGTTGCTGAGCAATCTATATTAAAATGGTCTCAAGTAATTGAGCAAATGGAGGATCAGATTTCTGAAGTACTTGAAGAAGAGAGGGAAGAAAGGATCCTAAGGAAAGCTGAAATGGAGGCCACAAAGgCCGAAAACATGATTGAACATCGGGAAGATATCTACTCTCGCCCGAAAAGAACCTGGTTTGTTacagagaaggagaagaagctTTCGGCAAAAGCAGCAAAGGCATCCTTTGATAAGGAAGATGGTTCTTCTCATAAGGTGGTTAGTGCCCAGCAAGCTGAAGACCTAAAATTGAAGGAAAAGAGGAAGCGGGAACGAGAGAAAAATATGCCTAGAAAGAAGCGCAGAAAGTTGGAAGCAGCTAGAGAGATGTTGGAGGATGACGAGCAAGATGACAAACCAAAAGGTAAGGGGACAGATAAGAATGAAAAAGCTGGATTGACACTTGCTGATCTTGCTTACCGACGTGCAAAAGCAGTAAAGGCCACCAAGAGGGCACTAGACTCTGGCAAGATTGTGAAGAAGCCTCAAAAGAAGTCTAATAAATCTAATCCTTCGCGAAAGCCTTCCTCTTCAAAGACAGAAGATATGCGGGAGCTATTCCAAAATGACATGAAGGATAAAAAGCCGAAACAGAAAGGTTCTGGAATAGGAAAGAAGGCGAAGAAATCATTCAAAAGCAAGTCAAGGTACAAGAGGAAGTAG 2271 0.4161 MSPSFIFDPPSDEEIEFSEHESDEEEQSEQEQQSESEGGESESEDERIEQRVSKKKTVSPWDFTKYSESVAEEHARRSTTSVDDKIYAVRKRSAPVVALPDSDDESSSDAEDDKQEDYRPEEEDEEEGNAGDKKSFFAPSDGTSFSADSFMQLNLSRPLLRACEALGFTKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRMNAIRVLILTPTRELAAQVHSMIMTLAKHTDIRCCLIVGGLSTKEQEAALRTMPDIVVATPGRMIDHLRNSMSVDLDDLSVLILDEADRLLQLGFSAEIQELVRLCPKKRQTMLFSATMTEEVNDLVKLSLSKPLRLSADPSAKRPAALTEEVVRLRNMREVNQEAVLLAMCSKTFTSKVIIFSGTKQAAHRLRIIFGLAGLKAAEFHGNLTQAQRLDALEQFRKQQVDFLIATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGRAGSAITFVTDRDRSLLKAIIKRAGSKLKKRTVAEQSILKWSQVIEQMEDQISEVLEEEREERILRKAEMEATKAENMIEHREDIYSRPKRTWFVTEKEKKLSAKAAKASFDKEDGSSHKVVSAQQAEDLKLKEKRKREREKNMPRKKRRKLEAAREMLEDDEQDDKPKGKGTDKNEKAGLTLADLAYRRAKAVKATKRALDSGKIVKKPQKKSNKSNPSRKPSSSKTEDMRELFQNDMKDKKPKQKGSGIGKKAKKSFKSKSRYKRK 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05137 756 Coils Coil 612 632 - -
Tsu02g05137 756 MobiDBLite consensus disorder prediction 12 43 - -
Tsu02g05137 756 MobiDBLite consensus disorder prediction 67 90 - -
Tsu02g05137 756 MobiDBLite consensus disorder prediction 737 756 - -
Tsu02g05137 756 Gene3D - 97 355 IPR027417 -
Tsu02g05137 756 PANTHER RNA HELICASE 51 721 - -
Tsu02g05137 756 SMART helicmild6 403 488 IPR001650 -
Tsu02g05137 756 MobiDBLite consensus disorder prediction 634 666 - -
Tsu02g05137 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 292 503 IPR027417 -
Tsu02g05137 756 MobiDBLite consensus disorder prediction 679 697 - -
Tsu02g05137 756 MobiDBLite consensus disorder prediction 104 128 - -
Tsu02g05137 756 Coils Coil 526 573 - -
Tsu02g05137 756 MobiDBLite consensus disorder prediction 596 756 - -
Tsu02g05137 756 Pfam Helicase conserved C-terminal domain 385 488 IPR001650 -
Tsu02g05137 756 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 179 353 IPR014001 -
Tsu02g05137 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 353 IPR027417 -
Tsu02g05137 756 MobiDBLite consensus disorder prediction 1 138 - -
Tsu02g05137 756 MobiDBLite consensus disorder prediction 711 736 - -
Tsu02g05137 756 Pfam DEAD/DEAH box helicase 172 342 IPR011545 GO:0003676|GO:0005524
Tsu02g05137 756 MobiDBLite consensus disorder prediction 44 58 - -
Tsu02g05137 756 SMART ultradead3 167 368 IPR014001 -
Tsu02g05137 756 CDD SF2_C_DEAD 365 497 - -
Tsu02g05137 756 Gene3D - 365 550 IPR027417 -
Tsu02g05137 756 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 364 527 IPR001650 -
Tsu02g05137 756 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 299 307 IPR000629 -
Tsu02g05137 756 PANTHER BNAA01G17110D PROTEIN 51 721 - -
Tsu02g05137 756 CDD DEADc_DDX27 159 354 - -
Tsu02g05137 756 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 148 176 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05137 Tsu-Chr2 60419379 60427420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05137 103 505 Eukaryotic Initiation Factors Gene Family AT3G13920 33.005 1.97e-51 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05137 K13181 - gmx:100791233 990.334