Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05135 ATGAGTTGTTTTCGTTGTGTAGGAAAATCACGTGAAAAGATCCAAAATAATGACAATTATAGTCATAGAGCGAAGAAGCAGAGTAATATCAGTTCAGCtgaTAAGGTCAAAGTTGATATGCATTTGAATTTGAGTGTGAATGATAAAAGCGAAGATGATTCAAAACACGATCAACTTTCGTTAGACGTgaagaaattgaatttgaaagacGAGGTTTCAACTGACGGAAAAGTTGCAAAGACATTCACTTTTGATGAGCTTTCAACTGCAACAGGAAAGTTTAGGGCTGATACCTTTGTTGGTGAAGGAGGGTTTGGGAAGGTTTATAAGGGATACATTGAGAAAATTAACGAGGTTGTTGCAATAAAGCAACTTGACCCGAACGGGCTTCAAGGAATAAGGGAATTCGTAGTTGAAGTGTTAACACTTAGTCTGGCAGACCACCAAAACCTTGTCAAGTTATTAGGGTTTTGTGCCGAGGGACAGCAGAGGCTATTGGTTTATGAGTACATGCCATTGGGATCTTTGGAGAGTCATTTGCATGACCTTTCGCCCGGAAAAAAACCACTGGATTGGAATACAAGAATGAAAATAGCAGCTGGTGCAGCTCAAGGTTTGGAGTATTTGCATTTCAAAATGAAGCCACCTGTCATATACCGCGACCTCAAATGCTCCAACATTTTGTTAGGCGACGATTATCATCCCAAGTTATCTGATTTTGGCTTGGCGAAAGTAGGTCCAATTGGTGATAAGACTCATGTTTCGACAAGAGTTATGGGCACATATGGGTACTGTGCTCCAGATTACGCAATGACGGGTCAATTGACATTCAAGTCTGACATTTACAGCTTTGGTGTTGTTCTTTTGGAGCTCATCACAGGCAGAAAGGCCATCGATCTTACGAAACCTCACAAAGAACAAAATCTTGTCGCATGGGCAAGGCCTTTATTCAAAGACAGAAGAAAATTCTCGTATATGGTTGATCCATTGCTTGAAGGTCAATATCCAGTGAGGGGCTTGTATCAATCTCTTGCTATTGCTGCTATGTGTGTGCAAGAGCAGCCTAATATGCGGCCAGTTACATCCGATGTGGTCACGGCTCTAAATTACCTTGCTTCGCAAAAATATGATCCACAAATTCATCCGATACAAAAATCTAGAAGGGGTGATGGTCATAGACGTGTTACTAGTACTGACTCGGAGACGTCAGTCAGATCGGAAGACTAG 1227 0.4075 MSCFRCVGKSREKIQNNDNYSHRAKKQSNISSADKVKVDMHLNLSVNDKSEDDSKHDQLSLDVKKLNLKDEVSTDGKVAKTFTFDELSTATGKFRADTFVGEGGFGKVYKGYIEKINEVVAIKQLDPNGLQGIREFVVEVLTLSLADHQNLVKLLGFCAEGQQRLLVYEYMPLGSLESHLHDLSPGKKPLDWNTRMKIAAGAAQGLEYLHFKMKPPVIYRDLKCSNILLGDDYHPKLSDFGLAKVGPIGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDLTKPHKEQNLVAWARPLFKDRRKFSYMVDPLLEGQYPVRGLYQSLAIAAMCVQEQPNMRPVTSDVVTALNYLASQKYDPQIHPIQKSRRGDGHRRVTSTDSETSVRSED 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05135 408 MobiDBLite consensus disorder prediction 382 408 - -
Tsu02g05135 408 SUPERFAMILY Protein kinase-like (PK-like) 78 368 IPR011009 -
Tsu02g05135 408 Gene3D Phosphorylase Kinase; domain 1 78 170 - -
Tsu02g05135 408 ProSiteProfiles Protein kinase domain profile. 94 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g05135 408 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
Tsu02g05135 408 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 401 - -
Tsu02g05135 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Tsu02g05135 408 Gene3D Transferase(Phosphotransferase) domain 1 171 388 - -
Tsu02g05135 408 Pfam Protein kinase domain 97 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g05135 408 CDD STKc_IRAK 100 369 - -
Tsu02g05135 408 SMART serkin_6 94 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g05135 408 PANTHER OS07G0668900 PROTEIN 1 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05135 Tsu-Chr2 60409769 60412585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05135 1 373 Glycoside Hydrolase AT3G07070 54.813 2.34e-147 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Tsu02g05135 Pkinase 3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05135 - - gmx:100794680 625.935