Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05128 atgggAAGAGCTCCTTGTTGTGACAAAGCAAATGTGAAGAAAGGACCATGGTCACCAGAAGAAGATTCAAAGCTTAAAgattatatagaaaaaaatggAACTGGTGGAAATTGGATTTCTCTTCCTCAAAAAGCTGgtttaagGAGATGTGGAAAAAGTTGTAGATTAAGATGGCTTAACTATCTTAGACCAAATATTAAGCATGGAGAATTTTCAGATGAAGAAGACAGAATCATTTGCACTCTTTATGCTAATATTGGAAGCagGTGGTCAATTATAGCTGCACAATTACCTGGAAGAACTGATAATGATATAAAAAACTATTGGAACACAAAACTTAAGAAGAAACTAATGAATTTGCTTCCTCAATCTCATCATAACACAATTTTACCAACTTATCAACAAATCACTTCTCCATTACCTTCTCATTGCACTTCATATTACAATCAACCAAACACATCTTTCATCACAAACATTGAACAAATTTCTCTTCCTTCATCAATAAGTTCAATCTCTAACCCTTTTTACCATAACCAAGAGTCTTTACTCAATGGTTTTAATACTAACACTTCCATGCAATATCATTCTTCTATTGGTGAAAGTGTTGTCATGTTTGGAAGTGAGGGAAGTTGTTGCAGTTCATCTGATGGAAGTAGTCTTGGAAAACAAGAAGAGATAATAGGATTTCAGAATTTCATGCAAAGTTGTCATAACAAGTTGATTAATACTAGTCATCATGGAAGTGATGGAAGAGGAGAATATCTTGTTGATGTTAACCATTgggaaaatgaaaaaatgaatttgtgTTTTGGTCAATATCAAAAGCAAATTAGTACAACTGCATTGGATTATGATCTTGAGTATATTAAACAATTGATTAGTTGTAATAATGGTAATTACTTGAGTATTGATGAAAACAAGATGAAGGATGAGAAGACTATGTACTACTACTGA 954 0.3092 MGRAPCCDKANVKKGPWSPEEDSKLKDYIEKNGTGGNWISLPQKAGLRRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICTLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMNLLPQSHHNTILPTYQQITSPLPSHCTSYYNQPNTSFITNIEQISLPSSISSISNPFYHNQESLLNGFNTNTSMQYHSSIGESVVMFGSEGSCCSSSDGSSLGKQEEIIGFQNFMQSCHNKLINTSHHGSDGRGEYLVDVNHWENEKMNLCFGQYQKQISTTALDYDLEYIKQLISCNNGNYLSIDENKMKDEKTMYYY 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05128 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Tsu02g05128 317 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Tsu02g05128 317 CDD SANT 16 62 IPR001005 -
Tsu02g05128 317 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Tsu02g05128 317 SMART sant 67 115 IPR001005 -
Tsu02g05128 317 SMART sant 13 64 IPR001005 -
Tsu02g05128 317 PANTHER TRANSCRIPTION FACTOR RAX3 1 297 - -
Tsu02g05128 317 Gene3D - 69 135 - -
Tsu02g05128 317 Gene3D - 7 68 - -
Tsu02g05128 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Tsu02g05128 317 CDD SANT 70 111 IPR001005 -
Tsu02g05128 317 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Tsu02g05128 317 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Tsu02g05128 317 PANTHER OS09G0431300 PROTEIN 1 297 - -
Tsu02g05128 317 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05128 Tsu-Chr2 60322522 60324081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05128 1 119 MYB Transcription Factor Family AT5G65790 89.076 4.27e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu02g05128 Myb_DNA-binding 3.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05128 K09422 - gmx:100808114 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05128 02 60322522 60324081 Tsu02g05128 02 60322522 60324081 ECH
Tsu02g05128 02 60322522 60324081 Tsu02g03653 02 41081334 41083333 PCT