Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05127 atgCAAAGATCAGGTTTTGGTTCGGATGGAATATACAGGTCTCTAAGACCTTCCCTTACCTTACCAAAAAACCCGAACCTCTCCCTCGTTACACACTTATTCAACAAAGTCGCTTCTTCTCAAACAAAAACCGCTCTTATAGATGCTGACACTaatcaaaccctaaatttcgctcaattaaaatcactaacaaTTAAACTCGCACATGCTTTTATTCACATCGGTATTAAAAAAACCGACGTCGTTTTATTCCTCGCTCCAAATAGTTATCTCTACCCTGTTTTCTTCCTCGCCGTCGCTTCCATCGGCGCCGTCGCCTCCACCGTCAATCCTACTTACACCACCATAGAAGTCTCTAAACAAGCAAAAGATTCAAATCCGAAGCTCGTCATCACCGTCGCTGAATTATGGGAGAAAGTAAAACACCTCAATATCCCCGCCGTTTTTCTCAACTCCGGCACGACAACACCGACGCCGACACCGAATGTTACGAGTTTCGAATCGTTCGTGAAACTCGGCGAATCGGAAACTAAATTTCCGGAAATTGATATAAAACAGAGCGATACGGCGGTGCTTTTGTATTCCTCCGGTACGACAGGTGTAAGCAAAGGAGTGATTCTTACGCACGGGAATTTCATCGCTTCTGCATCGATGATTTCGATGGATGATGAATTGAATGGAGATATAAACGATGTGTATCTCGTTGTTCTTCCAATGTTTCATGTATTTGGACTTGCGGTGATTACGTTTTCTCAGCTTGTGAGAGGAAATTGTGTGGTTTCGTTGAAgagatttgaatttgaagtgGTTTTGAAAACTATTGAGAAATTTAGGGTTACGAAATTTTGGGTTGTGCCTCCTATTATACTTGCTCTTGCTAAAAATGGTTTGGTTGATAAGTATGATCTTTCTTCTTTGAAGTATATTGGTTCTGGTGCTGCTCCTCTTGGAAAAGAGTTGATGGAAGAGTGTGCTAAACGATTCCCTCATGCTGTTGTTTCTCAGGGATATGGTATGACCGAAACTACTGGGATTGTTTCTGTGGAGAATCCAAGGATGGGGATTCGGCATACTGGCTCAGCTGGAATGCTTGTTGCTGGAGTGGAAGCACAAATTGTCAGTGTGGATACACTGAAGCCACTCCCTCCTGGACAGCTTGGTGAGATATGGGTACGAGGTCCTAACATGATGCGAGGTTATCACAACAATCCACAGGCCACAAGATTGACTATAGATGACAAAGGTTGGGTACATACAGGAGATCTTGGATATTTTGATGACGATGGCCATCTTTTTGTCGTTGACCGTATCAAAGAACTGATCAAGTATAAAGGTTTCCAGGTTGCACCAGCAGAACTCGAAGGGCTTCTTGTTTCTCATCCTGAAATACTTGATGCTGTGGTTATTCCATTCCCTGATGCCGAAGCCGGTGAGGTTCCTGTTGCCTATGTTGTACGATCACCCAATAGTTCACTTACTGAGGAAGATATTAAGAAGTTCATTGCTAATCAGGTAGCACCTTTCAAAAGACTGCGAAGGGTAACATTCATCAACACTGTTCCGAAAACAGCATCAGGAAAAATTCTAAGAAGAGAGCTTATCGACAAAGCACGATCCAAAATATAA 1626 0.4145 MQRSGFGSDGIYRSLRPSLTLPKNPNLSLVTHLFNKVASSQTKTALIDADTNQTLNFAQLKSLTIKLAHAFIHIGIKKTDVVLFLAPNSYLYPVFFLAVASIGAVASTVNPTYTTIEVSKQAKDSNPKLVITVAELWEKVKHLNIPAVFLNSGTTTPTPTPNVTSFESFVKLGESETKFPEIDIKQSDTAVLLYSSGTTGVSKGVILTHGNFIASASMISMDDELNGDINDVYLVVLPMFHVFGLAVITFSQLVRGNCVVSLKRFEFEVVLKTIEKFRVTKFWVVPPIILALAKNGLVDKYDLSSLKYIGSGAAPLGKELMEECAKRFPHAVVSQGYGMTETTGIVSVENPRMGIRHTGSAGMLVAGVEAQIVSVDTLKPLPPGQLGEIWVRGPNMMRGYHNNPQATRLTIDDKGWVHTGDLGYFDDDGHLFVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVIPFPDAEAGEVPVAYVVRSPNSSLTEEDIKKFIANQVAPFKRLRRVTFINTVPKTASGKILRRELIDKARSKI 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05127 541 Pfam AMP-binding enzyme 36 443 IPR000873 -
Tsu02g05127 541 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 4 540 - -
Tsu02g05127 541 Gene3D - 439 540 IPR045851 -
Tsu02g05127 541 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 540 - -
Tsu02g05127 541 Pfam AMP-binding enzyme C-terminal domain 452 527 IPR025110 -
Tsu02g05127 541 Gene3D - 9 438 IPR042099 -
Tsu02g05127 541 SUPERFAMILY Acetyl-CoA synthetase-like 23 539 - -
Tsu02g05127 541 CDD 4CL 21 533 - -
Tsu02g05127 541 ProSitePatterns Putative AMP-binding domain signature. 192 203 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05127 Tsu-Chr2 60309833 60314284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05127 1 541 Monolignol Biosynthesis Gene Families AT4G05160 66.176 0.0 757
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05127 K01904 - gmx:100797843 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05127 02 60309833 60314284 Tsu02g05127 02 60309833 60314284 ECH