Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05125 ATGGTTTCTGAAGCCAGCAAGAAGAAGGCTGCTCAGAAGAAGGCTGCCGCTGCCGCTAAGAGAGGAGCCAAAGTACCTGTTTCATCGAAAACCGCCTTGGATAAGGCGGTGGACAGTGTTTCCAACGGAATTGGGGAGATTCAGATATCTGATCGCACATGCACCGGTGTCCTCTGTTCTCATCCTCTTTCTAGGGATATTCGGATAGAATCTCTATCGGTTACTTTCCACGGACATGATCTTATAGTTGATTCTGAGCTGGAGCTAAATTATGGAAGACGTTATGGTTTGCTTGGATTAAACGGCTGTGGGAAATCTACCCTGCTTACGGCAATAGGTCGCCGCGAGCTTCCTATTCCAGATCACATGGATATTTATCACCTTAGCCGGGAAATTGAAGCCTCTGACATGTCTGCATTGGAGGCTGTCATTAGCTGTGACGAGGAAAGGTTGAGGTTGGAGAAAGAAGCTGAAATTCTGGGAGCACAAGACGATGGCGGTGGTGAAGCACTTGAACGAGTTTATGAACGATTGGAAGCTATGGATGCATCAACTGCAGAAAAGCGTGCTGCTGAAATTTTATTTGGTCTTGGTTTCAACAAGCAGATGCAGGCTAAGAAGACACGCGATTTTTCTGGTGGTTGGAGAATGAGGATTGCTTTAGCACGTGCCCTGTTTATGAACCCAACCATTCTTCTACTTGATGAGCCAACTAATCACCTTGATTTGGAAGCATGCGTGTGGctggaggagaatttgaaaaagtttgaccGCATTTTGGTTGTAATTTCACACTCACAGGATTTCCTTAATGGTGTCTGCACAAATATCATCCACATGCAAAACAAAAAGCTGAAGTTCTATACTGGTAATTACGATCAATATGTTCAGACACGTGCTGAACTGGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAGGAGCAGATTGCCTCAATGAAGGAATACATTGCACGTTTTGGCCATGGATCAGCAAAACTAGCTCGCCAAGCTCAGAGTAAAGAGAAAACTCTTGCAAAAATGGAGCGTGGTGGACTTACAGAGAAGGTGGTAAGAGACAAAATTTTAGTTTTCCGCTTTGTTGATGTGGGGAAACTTCCCCCACCCGTCCTCCAGTTTGTGGAGGTGACATTTGGTTACACTCCTGATAATCTCATCTACAAGAACATCGACTTTGGGGTCGATTTAGACTCCAGGATTGCTTTGGTTGGACCCAATGGAGCTGGGAAGAGCACATTCCTGAAACTTATGACAGGTGATTTGGTTCCCTTAGATGGCATGGTTCGTCGTCATAATCACCTTCGCATCGCACAGTTTCACCAGCACTTGACTGAAAAACTAGACCTGGAACTGTCTGCTCTTCAATTTATGATTAAAGAATACCCTGGAAATGAGGAAGAGAGGATGAGAGCAGCTATTGGAAAGTTTGGTTTATCGGGTAAAGCGCAGGTGATGCCTATGAGAAATTTATCCGATGGACAAAGGAGCCGTGTGATCTTTGCATGGTTAGCCTATAGACAGCCTCACTTGCTACTATTAGACGAGCCAACTAATCATTTAGATATCGAGACAATCGACTCATTAGCCGAGGCATTGAATGAATGGGATGGTGGTATGGTGCTTGTTAGTCATGATTTTAGGCTCATAAATCAGGTGGCTCATGAGATATGGGTGTGTGCTGATCAAACAGTGACCAGATGGGAGGGTGACATTATGGATTTCAAGCAGCATCTAAAGGCAAAGGCAGGTTTAGCTGATTGA 1782 0.4416 MVSEASKKKAAQKKAAAAAKRGAKVPVSSKTALDKAVDSVSNGIGEIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGRRELPIPDHMDIYHLSREIEASDMSALEAVISCDEERLRLEKEAEILGAQDDGGGEALERVYERLEAMDASTAEKRAAEILFGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVISHSQDFLNGVCTNIIHMQNKKLKFYTGNYDQYVQTRAELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKILVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNIDFGVDLDSRIALVGPNGAGKSTFLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLTEKLDLELSALQFMIKEYPGNEEERMRAAIGKFGLSGKAQVMPMRNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQTVTRWEGDIMDFKQHLKAKAGLAD 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05125 593 CDD ABCF_EF-3 67 284 - -
Tsu02g05125 593 ProSitePatterns ABC transporters family signature. 211 225 IPR017871 GO:0005524
Tsu02g05125 593 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 378 593 IPR003439 GO:0005524
Tsu02g05125 593 Coils Coil 591 593 - -
Tsu02g05125 593 PANTHER - 1 593 - -
Tsu02g05125 593 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 593 - -
Tsu02g05125 593 Pfam ABC transporter 278 350 IPR032781 -
Tsu02g05125 593 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 67 307 IPR003439 GO:0005524
Tsu02g05125 593 Pfam ABC transporter 394 525 IPR003439 GO:0005524
Tsu02g05125 593 Pfam ABC transporter 85 239 IPR003439 GO:0005524
Tsu02g05125 593 Gene3D - 354 591 IPR027417 -
Tsu02g05125 593 CDD ABCF_EF-3 378 570 - -
Tsu02g05125 593 Coils Coil 285 305 - -
Tsu02g05125 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 312 IPR027417 -
Tsu02g05125 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 572 IPR027417 -
Tsu02g05125 593 SMART AAA_5 403 591 IPR003593 -
Tsu02g05125 593 SMART AAA_5 91 293 IPR003593 -
Tsu02g05125 593 Gene3D - 67 331 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05125 Tsu-Chr2 60282628 60286780 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05125 378 571 Calmodulin-binding Proteins AT2G36910 26.316 9.46e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05125 K06185 - gmx:100785099 1075.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05125 02 60282628 60286780 Tsu02g05125 02 60282628 60286780 ECH
Tsu02g05125 02 60282628 60286780 Tsu02g03647 02 41007635 41011611 PCT