Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05109 ATGCAGAATCTTTTTCAAGTTGGAAATTCCAATTATTCATCATCAGAAATCTCCAACTttttaattacttcaaatcctTTGGAGTATCAGGAACTAGCTGCAAGTGCAGCAGAACCAAGTAGGTCAATGATGCATCATCAGCAGCAGCAGCTACACTATGGTTCATTTCCTCATTCTCCTCAACAAAAACAACAGTACTATTCTGAGCTTATAAGTGATTTTGGAAATTGCAGAAACAGAACTGTTCCACATCAAGTCATTGTCACTGATTGGTTTCTAAATAGTCAAACCAATTCTCTTGCATCTGTATATGGTGAAAATCATCAGAATCATTCTCTGCAAGATATTGTCATGCATCATAATGCAGGTCAAGGAAATTGTGTAAGAAATGCTTCTGAAATtgaacttcaacaaaatcaacaaagcTTATCATTATCACTTTCATCAAATGTTGCTAAAAACAAGGCTTATAATGATTCTCAGTTTGATCAAGAGGGGATGACTTCAACTTCAAGAGATGAAATTCAAACTATGAAGTATGTGAAGCCTTCAATCACTTCTAGAGATTGTGGAAAATCACTTCAAGACATGGTGGTTGGAATGATACCAAATTCAAAGATTAGTACTTTTGGTCCACTTGGTCCTTTTACTGGTTATGCTACTATTCTTAAGAATTCAAGATTCTTAAAGATTGCTCAAAATTTGTTAGAtgaattttgttcaaaatttgtGACAACATATGATGTTTTAGAAAATGAGGTTGCTTCTAAAGGAAGTAATTATTCATGTTCTTCATCATCTATGTTTCATAGTGCTGAATGGGGGGTTAGAAGTAACTTTGGTGTTTCTATGAGACCAGATTATCAACAGATTAAGGCTAAGCTTATGTGCATGCAAGATGAGGTCAGCAGGCGATACAAGCAGTACCATCATCAAATGCAAATGGTCTTTGCATCATTTGAATCAGTAGCAGGTCTCAATTCAGCTACTCCTTACATTACCTTAGCTTTGAAGTCAGTATCAAAACACTTCAAGGGCTTAAACAATGCTATTTCAAACCAGCTTAAACTTATAAGCGAAGTCTTACAAGATGATCCGTCAATACCAGCCACGGCCAATAGTAGCAAACTAATTGACACTAATGTGACAAACCTAAGGTGCATGGACCAAAGCCTACAAAATAACAAACCTGAAAAAGGTCCAGCAGGTTTTCATGATCAACAACTACAGCATGTTTGGAGGCCTCAGAGAGGTTTTCCCGAACGTGCAGTGGCGATCCTTAGAGCTTGGTTGTTTGAACATTTTCTTCATCCTTATCCGACAGACATTGACAAACACATGTTGGCTACTCAGACAGGTCTTTCGCGAAACCAGGTATCAAATTGGTTTATCAATGCTCGTGTTCGCGTGTGGAAGCCGATGGTTGAGGAAGTACACATGcttgacaaaaaagaaacaGATACCAGTGAGAGTTCAAGTCCAAACGAGGGAGCTTTTGGCACCGTAGGTAGTTCTAGCCAGCCTCGAATGGATAAGGCATCGCAGAAGTATGTTATGCAATCAATACCCGAAGACCAAATTCAATATATGGCATTTGGTTCAAGATCTATAGATACAAATGCAGCGGAACAATGGAGACAAGAGAAGCGGTCGAAATTGGAATGCGGAATGAGTTCAAGAATGGATGGAACATTGATGGATTTTTTACCATATAGACATAGTGGACATGATGTTGTGCAATCACTTGGATTGGATCTGTTTCATTGA 1767 0.3679 MQNLFQVGNSNYSSSEISNFLITSNPLEYQELAASAAEPSRSMMHHQQQQLHYGSFPHSPQQKQQYYSELISDFGNCRNRTVPHQVIVTDWFLNSQTNSLASVYGENHQNHSLQDIVMHHNAGQGNCVRNASEIELQQNQQSLSLSLSSNVAKNKAYNDSQFDQEGMTSTSRDEIQTMKYVKPSITSRDCGKSLQDMVVGMIPNSKISTFGPLGPFTGYATILKNSRFLKIAQNLLDEFCSKFVTTYDVLENEVASKGSNYSCSSSSMFHSAEWGVRSNFGVSMRPDYQQIKAKLMCMQDEVSRRYKQYHHQMQMVFASFESVAGLNSATPYITLALKSVSKHFKGLNNAISNQLKLISEVLQDDPSIPATANSSKLIDTNVTNLRCMDQSLQNNKPEKGPAGFHDQQLQHVWRPQRGFPERAVAILRAWLFEHFLHPYPTDIDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEVHMLDKKETDTSESSSPNEGAFGTVGSSSQPRMDKASQKYVMQSIPEDQIQYMAFGSRSIDTNAAEQWRQEKRSKLECGMSSRMDGTLMDFLPYRHSGHDVVQSLGLDLFH 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05109 588 Pfam Associated with HOX 222 352 IPR006563 -
Tsu02g05109 588 SMART prehox3 217 353 IPR006563 -
Tsu02g05109 588 SMART HOX_1 413 477 IPR001356 GO:0003677
Tsu02g05109 588 CDD homeodomain 413 474 IPR001356 GO:0003677
Tsu02g05109 588 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 13 584 - -
Tsu02g05109 588 Pfam Homeobox KN domain 430 469 IPR008422 GO:0003677|GO:0006355
Tsu02g05109 588 MobiDBLite consensus disorder prediction 482 512 - -
Tsu02g05109 588 Gene3D - 416 478 - -
Tsu02g05109 588 ProSiteProfiles 'Homeobox' domain profile. 410 473 IPR001356 GO:0003677
Tsu02g05109 588 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 13 584 - -
Tsu02g05109 588 SUPERFAMILY Homeodomain-like 414 478 IPR009057 -
Tsu02g05109 588 MobiDBLite consensus disorder prediction 491 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05109 Tsu-Chr2 60111271 60114441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05109 211 482 Homeobox Transcription Factor Family AT5G02030 51.087 1.85e-72 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Tsu02g05109 POX 5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05109 - - mtr:MTR_2g095050 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05109 02 60111271 60114441 Tsu02g03622 02 40677019 40685683 PCT