Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05107 atgttACGGCGTGACGAGGATCCATTAAAGTGGGACGAGGCGGCGGAGTCATTGAAGGGGAGCCATTTTGAGGAAGTGAAGAGGATGGTGGAGGATTATAGGAAGGAGGTTGTGATGGTGGGAGGAGAGAAATTGAGGGTGGGGGAGGTGGCTGCGGTGGCCGGGAGGATGGCGGCGGTGGAGCTGAATGAGGAGGCAAGGGTTAGAGTTAAGGAGAGTAGTGAGTGGGTGATGGAGAGTGTTCAAAAAGGTACTGATTGTTATGGTGTCACTACTGGCTTTGGCTCAACCTCTCATAGAAGAACTACTCAAGGCCATGCCCTACAAACTGAGCTTATTAGGTTTTTGAATGCTGGAATATTTGGAAATGGAACAGAATCATGCCATACATTACCACACAATGCAACAAGAGCTGCAATGCTAGTAAGAATCAACACACTTCTTCAAGGCTACTCAGGAATCAGATATGAAATACTAGAAGCCATTGCAAAACTTCTCAACCACAACATTACACCATGTTTACCGTTGCGCGGATCAATTTCCGCCTCAGGTGACTTAATTCCATTTTCTTACATAGCTGCACTTCTAACAGGTAGACCTAACTCAAAAGCTATTAATGGATCCAATGGTGAAACCCTAAATGCTTCAGAAGCTTTTAGTCTAGCTGATATTGGTGAAGAATTCTTCAATTTGCAACCAAAAGAAGGTCTTGCACTTGTTAATGGAACTGGGGTTGGAGCTGGTTTAGCTTCTATTGTTTTATTCGATGCTAATATCTTAACCGTTTTATCTGAAATTATGTCGGCGATTTTCGCTGAAGTTATGCAAGGGAAACCCGAGTTTACAGATCATTTGACACATAAGTTGAAGCATCATCCTGGTCAAATTGAAGCTGCCGCAATGATGGAACATATTTTGCATAAAAGTGTTAATACTGCGATGAAATCGCATGAGATAGATTTTTATAGAAAGCCTAAACAAGATAGATATGCACTTAGGACTTCGCCACAATGGTTAGGTCCACAAATTGAAGTTATTAGGCATTCAACAAAAGTAATAGAGAGAGAGATTAATTCAGTGAATGATAATCCTTTGATTGATGTGAAAAGGAACAAAGCTTTGCATGGTGGAAATTTTCAAGGTACTCCAATAGGAGTTTCTATGGATAATACAAGATTAGCTTTGGCTGCAAttggaaaattaatttttgctcAAATGTCTGAGTTGGTTAATGATTTTTATAACAATGGTTTGCCTTCAAATCTCTCCGGTGGTAAATGTTTAAGTTTGGATTATGGACTTAAAGGCGGCGAGATAGCAATGGCTGCATACTGTTCCGAGCTTCAGTTTTTAGCTAATCCTGTTACTAATCATGTTCAAAGTGCTGAACAGCATAATCAAGATGTTAATTCACTTGGATTAATATCTGCTAGGAAAACAGAAGAAGCTGTTGAGATATTAAAGCTTATGTCTTCAActtatttgattgctttatGTCAAGCAATAGATTTGAGGTATTTGGAGGAGAATTTAAAGACTACAGTTAAGAATACAGTGAGTCAAGTGgctagaaaaatgttaaatgttGGAGTTAATGGTGAGATTCATCATTGCATGTTTTGTGAGAAAGATTTGATTAAAGTGGTTGATTGTGAGTATGTTTTTGCATATATTGATGACCCTTGTAATGACACATATCCACTTATGCAAAAATTGAGGCAAGTGCTTATGGAACATGCATTGAAAAGTGGTAAATATAATGATTTGAAAAGTTTAAATGCTTCTATTTTCCTTAAGATAGGTGCATTTGAGGAGGAACTAAAAAGGGTGTTGCCAAAAGAGGTTGAATCTACAAGAAGTGCTTTTGAAAAAGGGATTTTAGCAAGTCCTAATAGAATCAAGGAATGCAGGTCTTATCCATTGTATAAGTTTATTAGAGAGGAATTGGAAACTGAGTTTTTAACTGGTGAGAAAGTTAAATCACCAGGAGAAGATTTTGATAAAGTTTTTAATGCAATTAATCTTGGAAAGATAATAGATCCAATGTTTGAATGCCTCAAGGATTGGGATGGTACTCCCATTCCTATATAA 2091 0.3725 MLRRDEDPLKWDEAAESLKGSHFEEVKRMVEDYRKEVVMVGGEKLRVGEVAAVAGRMAAVELNEEARVRVKESSEWVMESVQKGTDCYGVTTGFGSTSHRRTTQGHALQTELIRFLNAGIFGNGTESCHTLPHNATRAAMLVRINTLLQGYSGIRYEILEAIAKLLNHNITPCLPLRGSISASGDLIPFSYIAALLTGRPNSKAINGSNGETLNASEAFSLADIGEEFFNLQPKEGLALVNGTGVGAGLASIVLFDANILTVLSEIMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAMMEHILHKSVNTAMKSHEIDFYRKPKQDRYALRTSPQWLGPQIEVIRHSTKVIEREINSVNDNPLIDVKRNKALHGGNFQGTPIGVSMDNTRLALAAIGKLIFAQMSELVNDFYNNGLPSNLSGGKCLSLDYGLKGGEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTEEAVEILKLMSSTYLIALCQAIDLRYLEENLKTTVKNTVSQVARKMLNVGVNGEIHHCMFCEKDLIKVVDCEYVFAYIDDPCNDTYPLMQKLRQVLMEHALKSGKYNDLKSLNASIFLKIGAFEEELKRVLPKEVESTRSAFEKGILASPNRIKECRSYPLYKFIREELETEFLTGEKVKSPGEDFDKVFNAINLGKIIDPMFECLKDWDGTPIPI 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05107 696 Pfam Aromatic amino acid lyase 45 515 IPR001106 -
Tsu02g05107 696 Gene3D - 2 243 IPR024083 -
Tsu02g05107 696 CDD PAL-HAL 45 505 IPR001106 -
Tsu02g05107 696 PANTHER AMMONIA-LYASE, PUTATIVE-RELATED 6 696 - -
Tsu02g05107 696 SUPERFAMILY L-aspartase-like 6 696 IPR008948 GO:0003824
Tsu02g05107 696 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 7 687 IPR005922 GO:0005737|GO:0006559|GO:0016841
Tsu02g05107 696 Gene3D Fumarase/aspartase (Central domain) 245 691 - -
Tsu02g05107 696 Gene3D - 508 631 IPR023144 -
Tsu02g05107 696 PANTHER HISTIDINE AMMONIA-LYASE 6 696 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05107 Tsu-Chr2 60077307 60080145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05107 1 696 Monolignol Biosynthesis Gene Families AT2G37040 73.286 0.0 1067
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05107 K10775 - vvi:100241575 1074.31