Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05104 ATGGGATTTGATAATCCAAGATCTGAGAGGTTTGAAGATGAATCTGAGACATCAAAAGTTCCTACAACAAATGAAGTTAAGGTTAAATACCACATTGATGGAACACAAATACCTAAACCAAGTACCAAAAAGGCTCAAAAGAATGTTACAAGGAACAAGTTTTTGAAAACAAGAGTATTATCAAGAGTATTCTCAGAAGACTAtgaaagagtaaaaaaaagagtattagTATTAGATCCTAGAGGACAAATCATACAACGTTGGAACAAGATATTTTTAGTAGCATGTTTAGTCTCTTTGTTTGTGGATCCACTGTTCTTTTATTTACCAGTGGTTAGAGATGAAGTTTGCATTGATATTGGAAAAAAACTTGAAGTTGTTCTTACAATTGTTAGATCAGTTGGAGATTTGTTTTACATGATTCAGATTTTTACGAAGTTTCGTACCGCTTATGTTGCTCCTTCTTCCAAGGTTTTTGGTAGAGGAGAACTTGTTCTTACTTATTCTAAGATTGCTGTTAGGTACTTCAGCAAAGGTTTTTGGTTAGACTTTATTGCTGCATTGCCTCTTCCTCAGGTTTTGATTTGGATTATTATACCAACACTTAGGGGTTCAACCATGAGAAATACCAAAAATGTCCTTAGATTTTTCATCATTTTCCAATATATTCCAAGGCTGTATTTGATTTTTCCACTTTCATCACAAATTGTAAAAGCTACAGGAGTTGTGACAGAAACAGCATGGGCAGGTGCTGCTTACAACCTCATGCTTTACATGTTGGCCAGCCATATTTTAGGAGCTTGCTGGTACCTTCTATCAATTGAACGTCAAGAAGCATGTTGGAGAAGTGCGTGCAATATGGAGAAACCAAATTGTCAATATGGATTCTTTGATTGCCACAGGGTTAAAGATGCTCTAAGGGTCAAATGGTTTATAGCTAGTAATGTCACAAATTTATGTTCGCCGAATGCTAGTTTTTATCAGTTTGGTATATATGCTGACGCCGTGACTTCTCAAGTTACATCCTCACCATTCTTCAATAAGTACTTCTTTTGCCTCTGGTGGGGCTTAAGGAATCTCAGTTCTTTGGGGCAAGGCCTTCTTACTAGCACTTTTATTGGAGAAATAATGGTTGCCATTGTTGTGGCAACCCTTGGATTGGTTCTTTTTGCATTGCTGATTGGTAATATGCAGACATACCTTCAATCGATAACTGTTCGCCTAGAAGAGTGGAGAGTTAAAAGAACGGATACAGAACAATGGATGCATCATAGGCAATTACCTTCTGAACTAAGAGAATCTATTCGTAAATATAACCAATATAAATGGGTGGCTACACGAggagtagaagaagaagatctTCTCAAAGGACTTCCATTGGATCTTAGGAGAGACATCAAACGCCATCTTTGTCTTGAACTAGTTCGGGGAGTTCCTTTGTTTGATCAAATGGACGAGAGGATGCTAGACGCAATATGCGAAAGACTAAAGCCTGCATTATGCACCGAAGGCACTTACCTTGTTCGTGAAGGCGATCCAGTAAATGAAATGCTCTTCATAATTAGAGGCCATCTTGATTCTTACACCACAAATGGAGGCCGAGCCGGATTCTTCAACTCATGTCGTATTGGTCCAGGTGATTTCTGTGGCGAAGAACTATTAACATGGGCATTGGATCCAAGACCAAGTGTGATACTTCCTTCTTCCACAAGAACAGTTAAAGCTATCTCAGAAGTAGAAGCATTTGCACTCATAGCTGAAGATCTTAAGTTTGTTGCATCTCAATTTAGAAGATTACATAGTAAACAACTTAGACATAAATTCAGATTTTATTCACACCAATGGAGAACTTGGGCTGCTTGTTTTATTCAAGCTGCATGGAGAAGGCATAAGAAAAGGAAAGAAGCTGCTGAATTAAGAGCTAAGGAGAATCTTGTGGAAGCTGAAAAGGctgaaacaacaacaaaatatggGACAGGTTTTGTTGTTTATGGAAAAAATGTTGCAAGGAGTACTAGGAAAGGTGTTAATATCCATTCTGGAACAAATTCCGGGGTAGTTAGGTCTTTGCAGAAGCCGACAGAACCTGATTTTTATGATGAATAA 2106 0.3685 MGFDNPRSERFEDESETSKVPTTNEVKVKYHIDGTQIPKPSTKKAQKNVTRNKFLKTRVLSRVFSEDYERVKKRVLVLDPRGQIIQRWNKIFLVACLVSLFVDPLFFYLPVVRDEVCIDIGKKLEVVLTIVRSVGDLFYMIQIFTKFRTAYVAPSSKVFGRGELVLTYSKIAVRYFSKGFWLDFIAALPLPQVLIWIIIPTLRGSTMRNTKNVLRFFIIFQYIPRLYLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHILGACWYLLSIERQEACWRSACNMEKPNCQYGFFDCHRVKDALRVKWFIASNVTNLCSPNASFYQFGIYADAVTSQVTSSPFFNKYFFCLWWGLRNLSSLGQGLLTSTFIGEIMVAIVVATLGLVLFALLIGNMQTYLQSITVRLEEWRVKRTDTEQWMHHRQLPSELRESIRKYNQYKWVATRGVEEEDLLKGLPLDLRRDIKRHLCLELVRGVPLFDQMDERMLDAICERLKPALCTEGTYLVREGDPVNEMLFIIRGHLDSYTTNGGRAGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRHKKRKEAAELRAKENLVEAEKAETTTKYGTGFVVYGKNVARSTRKGVNIHSGTNSGVVRSLQKPTEPDFYDE 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05104 701 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 13 700 - -
Tsu02g05104 701 PANTHER - 13 700 - -
Tsu02g05104 701 SUPERFAMILY Voltage-gated potassium channels 79 402 - -
Tsu02g05104 701 MobiDBLite consensus disorder prediction 1 20 - -
Tsu02g05104 701 MobiDBLite consensus disorder prediction 675 701 - -
Tsu02g05104 701 CDD CAP_ED 480 611 IPR000595 -
Tsu02g05104 701 Pfam Ion transport protein 87 407 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tsu02g05104 701 Gene3D Helix hairpin bin 408 471 - -
Tsu02g05104 701 MobiDBLite consensus disorder prediction 1 23 - -
Tsu02g05104 701 Gene3D - 90 406 - -
Tsu02g05104 701 SUPERFAMILY cAMP-binding domain-like 410 606 IPR018490 -
Tsu02g05104 701 SMART cnmp_10 480 611 IPR000595 -
Tsu02g05104 701 MobiDBLite consensus disorder prediction 675 690 - -
Tsu02g05104 701 Coils Coil 631 652 - -
Tsu02g05104 701 Gene3D Jelly Rolls 478 598 IPR014710 -
Tsu02g05104 701 ProSiteProfiles IQ motif profile. 616 644 IPR000048 GO:0005515
Tsu02g05104 701 ProSiteProfiles cAMP/cGMP binding motif profile. 480 577 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05104 Tsu-Chr2 60047440 60051432 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05104 49 701 Ion Channels AT2G28260 74.426 0.0 1010
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05104 K05391 - gmx:100786868 1142.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05104 02 60047440 60051432 Tsu02g03611 02 40565391 40569847 PCT