Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05090 ATGCCTGAGGATATTCCTAACATGAAGGACTCTTGGTTTTTTGACAAGAATTTTAACGGTTTGTCGGATGAGGTTTTCGATGATGTTCTCCAGTTTTTTGACTTTCCATTAGAAGATGTGGAAGCTAATCCTGCTGAAGAAGATTGGAGTGCTCTTGGAGAGCCGTGTTTTGATGCGTTTCCGGTGGAACCGGTGGGATTGTGTGCTAAACCCAAAATTGAAAATCCCCAAATTGGGCACGGCTTCTCTGCTCCGTGCAATGAGATCTCCCCAATGATACAAGTGCCAAGAACTGCTAAACCAATATATGGAAAAACTCTTCCCAACCAGAATGTACCTTCCtatgaaaaaaaagttgtgCTTCAATACAGCCCGGTTTCTGTTTTCGAAGGAAGTAGTGCTTCCTCAGGTGAGAATTCCAGCTTTGATCTGCCTCCGATCCCAGTAAAGCGTGCTCGAAGTAAACGCCGGCGTCCTTCAAGCTCAAATCCTGTATTCTCGCTTTCTTTCATTGCTAATATAACGGCATTTCAAAAATATCTCAAGACACCTGCCTCCGAGTCAGATTTAAACAGAgtaaagaaacaaagaaaaaaagacgTCTCTGTGCTCTCAGGTGATTCTGAGACAAAGAGATCCTCTTCACAAGAATCAGCTGTCATTAGAAAATGCACACACTGCGAGGTCACAAAGACTCCGCAATGGAGAGAGGGACCTAAAGGACCCAAAACACTGTGCAATGCTTGTGGTGTTCGGTACAGGTCCGGACGCCTCTATCCTGAATACCGTCCTGCAAACAGCCCGACTTATGTAGAATCAGTGCACTCAAACTGTCACAAGAAGGTTCTGGAGATGCGAGGCGTAGTCGTCAAAGAAGGTGTTCGGGGACGTTCTATGTCGGCTTCGTCAAATCTTTCCGGAAATTCTGTAGGACAACAACGTTCTCATGGATCTTATTGA 960 0.4354 MPEDIPNMKDSWFFDKNFNGLSDEVFDDVLQFFDFPLEDVEANPAEEDWSALGEPCFDAFPVEPVGLCAKPKIENPQIGHGFSAPCNEISPMIQVPRTAKPIYGKTLPNQNVPSYEKKVVLQYSPVSVFEGSSASSGENSSFDLPPIPVKRARSKRRRPSSSNPVFSLSFIANITAFQKYLKTPASESDLNRVKKQRKKDVSVLSGDSETKRSSSQESAVIRKCTHCEVTKTPQWREGPKGPKTLCNACGVRYRSGRLYPEYRPANSPTYVESVHSNCHKKVLEMRGVVVKEGVRGRSMSASSNLSGNSVGQQRSHGSY 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05090 319 MobiDBLite consensus disorder prediction 188 206 - -
Tsu02g05090 319 MobiDBLite consensus disorder prediction 132 163 - -
Tsu02g05090 319 SMART GATA_3 218 268 IPR000679 GO:0006355|GO:0043565
Tsu02g05090 319 Gene3D - 214 292 IPR013088 GO:0006355|GO:0008270
Tsu02g05090 319 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 218 278 - -
Tsu02g05090 319 MobiDBLite consensus disorder prediction 297 319 - -
Tsu02g05090 319 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 26 287 - -
Tsu02g05090 319 PANTHER GATA TRANSCRIPTION FACTOR 26 287 - -
Tsu02g05090 319 ProSiteProfiles GATA-type zinc finger domain profile. 222 254 IPR000679 GO:0006355|GO:0043565
Tsu02g05090 319 CDD ZnF_GATA 223 270 IPR000679 GO:0006355|GO:0043565
Tsu02g05090 319 ProSitePatterns GATA-type zinc finger domain. 224 249 IPR000679 GO:0006355|GO:0043565
Tsu02g05090 319 Pfam GATA zinc finger 224 257 IPR000679 GO:0006355|GO:0043565
Tsu02g05090 319 MobiDBLite consensus disorder prediction 187 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05090 Tsu-Chr2 59945593 59950403 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05090 15 286 C2C2-Gata Transcription Factor Family AT1G08010 39.931 6.90e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tsu02g05090 GATA 1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05090 - - aprc:113853859 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05090 02 59945593 59950403 Tsu02g03602 02 40417850 40435615 PCT