Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05089 ATGAAGGAAGGTGAGAAAAGCTTAGATCCACAACTATGGCACGCATGTGCTGGAGGAATGGTTCAAATGCCATCAGTGAACACAAAAGTGTTCTACTTTCCACAAGGGCATGCAGAACATGCACAATCCAATGTTGATTTTGGAGATTCTTTCAGAATTCCACCACTTATACTCTGTCGTGTTGGTTCTGTGCAATTCTTAGCTGACCCTGAAACAGATGAAGTTTTTTCAAAGATAACTTTGATTCCTTTAAGAAATTCAGAGCTTGAAAATGAAGATTCTGATGGTTTTGATGGTAATGTTTCTGAGAATTCAGAAAAGCCTGCATCTTTTGCTAAAACTTTAACTCAATCTGATGCAAACAATGGTGGAGGGTTTTCTGTTCCTAGATATTGTGCAGAAACGATTTTTCCACGGCTTGATTACTCGGCTGAACCACCGGTTCAGACGGTGATTGCGAAGGATGTTCATGGTGAGGTTTGGAAGTTTAGACATATCTATAGAGGTACACCAAGGAGACACTTGTTAACAACTGGTTGGAGTAGTTTTGTGAACCAGAAAAAACTTGTTGCAGGTGATTCTATAGTGTTTCTGAGAGGTGAAAATGGTCAACTTTATGTTGGGATTCGTCGTGCGAAGAGAGGGATTGTTAATGGTTTAGAAACACCTTCTGGATGGAGTTCTGGTAATGGAAGTTGTGGTCTTGGTGTTGGAGGTTTTGGTGgtgctttttctgtttttttgagAGAGGAAAATAATAAGATTTTGAGAAATGGGATTGGTGATGGAGGTGTTGGTGGTAATTTGGGGGGTGGAAGAGTAAAAGTGACTGGTGAGTCAGTGAAAGAAGCTATGAGACTTGCTGCTAGTAATCAAACATTTGAGGTTGTTTATTATCCAAGAGCAAGTACTCCTGAGTTTTGTGTTAAGGTTTCTGCTGTTAAGGCTGCTATGAGGATTCAATGGTGTTCTGGTATGAGGTTTAAGATGCCATTTGAAACTGAGGATTCTTCTAGGATTAGTTGGTTCATGGGAACTATTTCTTCTGTTCATGTTGTCGATCCTATTCGTTGGCCTAATTCTCCTTGGAGACTTCTTCAGGTAACTTGGGATGAACCAGATTTGCTACACAATGTGAAGCGAGTAAGCCCGTGGTTGGTCGAGTTAGTATCAAACATGTCAGTAATTCATCTCTCACCATTCTCACCACCAAGAAAGAAGCTCCGTTTTCCGCAACATCCTGATttcccccttgatgttgtacAGTTTCCAATACCGACATTTTCGGGCAACCCTCTTAACCCTTTGTGTTGTGTATCATCTTCGGATCATTATAACGCTCCTGCCGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTTTATCAGATCTTCACCTTAACAACAGCAATAATAAACTTCAGTTAGGTGTGTTTCCAAAGAATCCTGAGACGACGATTTCTAATGATAAGGGCAAAGAAAGTTTATCATGTTTGTTGACTATAGGAAATTCTCATAAGAGAAGTTTGGAGATAAAATCTGATAATAATGTTAAGAGACACCAATTTTTGCTTTTTGGTCAACCAATTCTCACTGAACAACAAATCTCTCGAAAAGTTTCTACCGATGATGTTTTGTTGTCTCAGAATAAGGAAAAAGAGAAATGGTTTTTCAGTGATACTACTACTCAATCTTCAATTTCTGAACAGTTTTCACCAGCAAAATCTTCTACTACTAGTGCTAGTGCCGAGTTTTGTTGGCAACTTGGATTAGATACCGGTCATTGCAAGGTTTTCTTGGAGTCAGAAGATGTTGGAAGAACCTTAGACTTATCATGTGTTGGTTCTTATGAAGAACTATATCGAAAACTGGCTAAGATGTTCGGAATAGAAAGATCTGAGATGTTAAGTCGCGTACTCTACCGTGACGCTACAGGCGCTGTTAAACAAACCGGTGAAGAACCCTTCAGTGACTTCATGAAGACAGCAAAAAGATTGACAATTCTGATGGATTCAGCTAGCAAAGATACTAGAAGGGTATGTATCACAGGAACTAGGAATGCTGAACGTGGATTAGATGCATCAAATAAGACAGGACCTATGAGTATATTTGCTTAA 2124 0.3898 MKEGEKSLDPQLWHACAGGMVQMPSVNTKVFYFPQGHAEHAQSNVDFGDSFRIPPLILCRVGSVQFLADPETDEVFSKITLIPLRNSELENEDSDGFDGNVSENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRGENGQLYVGIRRAKRGIVNGLETPSGWSSGNGSCGLGVGGFGGAFSVFLREENNKILRNGIGDGGVGGNLGGGRVKVTGESVKEAMRLAASNQTFEVVYYPRASTPEFCVKVSAVKAAMRIQWCSGMRFKMPFETEDSSRISWFMGTISSVHVVDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSNMSVIHLSPFSPPRKKLRFPQHPDFPLDVVQFPIPTFSGNPLNPLCCVSSSDHYNAPAAGIQGARHAQIGISLSDLHLNNSNNKLQLGVFPKNPETTISNDKGKESLSCLLTIGNSHKRSLEIKSDNNVKRHQFLLFGQPILTEQQISRKVSTDDVLLSQNKEKEKWFFSDTTTQSSISEQFSPAKSSTTSASAEFCWQLGLDTGHCKVFLESEDVGRTLDLSCVGSYEELYRKLAKMFGIERSEMLSRVLYRDATGAVKQTGEEPFSDFMKTAKRLTILMDSASKDTRRVCITGTRNAERGLDASNKTGPMSIFA 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05089 707 ProSiteProfiles PB1 domain profile. 595 675 IPR000270 GO:0005515
Tsu02g05089 707 SUPERFAMILY DNA-binding pseudobarrel domain 105 212 IPR015300 -
Tsu02g05089 707 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Tsu02g05089 707 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 684 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu02g05089 707 Pfam Auxin response factor 284 367 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tsu02g05089 707 Gene3D - 109 213 IPR015300 -
Tsu02g05089 707 SMART B3_2 111 213 IPR003340 GO:0003677
Tsu02g05089 707 CDD B3_DNA 110 211 IPR003340 GO:0003677
Tsu02g05089 707 Gene3D - 594 679 - -
Tsu02g05089 707 Gene3D - 321 396 - -
Tsu02g05089 707 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Tsu02g05089 707 PANTHER AUXIN RESPONSE FACTOR 2 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05089 Tsu-Chr2 59919149 59923417 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05089 1 677 B3 DNA Binding Superfamily AT4G30080 58.883 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tsu02g05089 B3 2.4e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05089 - - mtr:MTR_2g094570 1234.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05089 02 59919149 59923417 Tsu02g03598 02 40368102 40372041 PCT