Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05087 ATGGCTATGGCTGTTGCACAACAAAGGGATAACAGCATTGAGAGACACATTGATTCTTCCGGGAAATATGTGCGGTATACTGCTGAACAGATTGAAGCTTTGGAAAAGGTTTATGTGGAATGCCCCAAACCAAGTTCATTGAGAAGGCAACAGCTGATTCGAGAGAATCCGGTTTTGTCCAACATTGAACCTAAGCAAATTAAGGTTTGGTTTCAGAATAGAAGGTGTAGGGAGAAGCAGAGAAAAGAGTCTTCTGAGCTTCAGACTTTGAACAGGAGACTTGCAGCAATGAATAAGCTATTGACGGAGGAAAATGATCGGCTGCAGAAGCAAGTTTCGCAGCTGGTGAATGAGAATGGATTTATGCGCCAGCAAATTACCACTATCACAGCTGCTCCAAGTGCTGATGGTAGTGGCAGCGATTCCGCGGCTGCTACTACTCCTCTGAGTTCCATGAGAGATGCTAATAGCCCTGCTGGATTCCTATCAATTGCAGAGGAAACATTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATATTTGCCATTTCTCAAGGTTGCAATGGAGTGGCAGCTCGAGCCTGTGGTCTTGTTAGTTTAGAACCTGCTAAGATTGTGGAGCTCCTTAAAGATCGCGCGTCTTGGTATCGTGACTGTCGGAGTTCAGAAGTTTTTACAATGTTCCCAGCTGGAAATGGAGGGACAATTGAACTTGTTTACACACAGACATATGCTCCAATGACGCTGGCTTCTGCTCGGGATTTCTGGACTCTAAGATACACTACAAACTTGGAAAATGGCAGTATTGTGGTTTGTGAAAGGTCACTGTCTGGTTCTGGTGCTGGGCCTAATGCTGCCGCTGCCTCACAATTTGAGAGGGCTGAAATGCTTCCCAGTGGCTATTTGATTCGACCATGTGAAGGTGGAGGGTCAATCATCCGCATTGTAGACCACCTAAACCTTCAGGCATGGAGTGTGCCAGAAGTGTTGCGACCACTCTACGAATCATCAATGATGGTTGCTCAGAGATTGACAATTGCAGCACTTCGCTATATCAGGCAAGTAGCTCAAGAAACAAGTGGAGAAGTGGTATATGGCATGGGTCGGCAACCTGCCGTTCTGAGAACTTTTAGCCAACGGATGAGCAGAGGTTTCAATGATGCTATCAATGGATTCAATGATGATGGCTGGTCTGTTTTGAACTGTGATGGTGCGGAGGGTGTTACTATTTCAGTTAATTCAATCAAGAATTTGAGTGGCACTTCTAATCCAGCAAGTTCCCTTTCACTCCTTGGAGGAATTGTCTGCGCAAAAGCTTCTATGTTACTCCAAAACATCACTCCTGCTGTTTTAGTTCGCTTTCTGAGAGAACATCGCTCAGAGTGGGCCGATTTTAGTGTTGACGCATTTTCTGCTGCATCGCTTAAAGCTGGCTCCTATGGATATACTGGAATGAGGTCTACGAGGTTCACCGGCAACCAAGCAATCATGTCGCTTGGACATTCAATTGAACATGAAGAGATGCTAGAAGTTATCCGCCTTGAAGGTCACGCTCCTACTCACGAAGATTCTTTTGTTTCTAGGGACGTTCATCTCTTACAGTTGTGTACTGGAATTGATGAAAATGCTGTCGGGGCTTGTTCTGAGCTCATATTTGCTCCAATTGATGACATGTTTCCAGAAGATGCTCCATTGGTGCCTTCTGGTTTCCGCATTGCGCTGTTGAATTCACAACAGggtgataagcagaactcaatGGCAGCGAATCGAACCTTGGATTTGACATCTGGTCTTGAAGTAGCCCCACCAACAACTCATGCCACAGGAGAAACATGCCCTAATAATCGATGTATTTTGACTGTTGCCTTCCAGTTTCCTTTTGAGACCGGTCTGCAGGATAATGTTGCAGCTATGGCACGTCAGTATATCCGTCGTGTAGTTTCCGCTGTGCAGGCACTTGCTAATGCTATTTCTCCATCCAGTGCTATCACTGCCGGTGAAGCAAAACTCTCCCCTGGCTCTCCTGAAGCGCTTACACTAGCTCAATGGATCTGCCAGAGTTATAGTACTTATTTGGCGGCGCCACTACTGAGATCTGATTCTGTTATCGGGGATATGGTACTGAAACATTTGTGGCATCATCCTGATGCTATTTTGTGCTGTTCTTTGAAGACGGTGCCCGTCTTCATCTTTGCAAACCAGGCTGGCCTCGACATGCTGGAAACAACTCTAGTGGCTCTACAAGACATCACGCTGGATAAAATATTCAATGACTCTGCACGCAAGAATTTGATTGCATACTTTGCTAAGTTAATGCAGCAGGGATTTGCTTGTATGCCAGCTGGAATCTGCATGTCAACTATGGGGAGGCACGCATCATATGATCAAGCTGTCGCGTGGAAAGTGCATTCTGAAGATACCAGTGTTCATTGCTTGGCATTCTCTTTCATAAATTGGTCATTTATATGA 2523 0.4546 MAMAVAQQRDNSIERHIDSSGKYVRYTAEQIEALEKVYVECPKPSSLRRQQLIRENPVLSNIEPKQIKVWFQNRRCREKQRKESSELQTLNRRLAAMNKLLTEENDRLQKQVSQLVNENGFMRQQITTITAAPSADGSGSDSAAATTPLSSMRDANSPAGFLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQGCNGVAARACGLVSLEPAKIVELLKDRASWYRDCRSSEVFTMFPAGNGGTIELVYTQTYAPMTLASARDFWTLRYTTNLENGSIVVCERSLSGSGAGPNAAAASQFERAEMLPSGYLIRPCEGGGSIIRIVDHLNLQAWSVPEVLRPLYESSMMVAQRLTIAALRYIRQVAQETSGEVVYGMGRQPAVLRTFSQRMSRGFNDAINGFNDDGWSVLNCDGAEGVTISVNSIKNLSGTSNPASSLSLLGGIVCAKASMLLQNITPAVLVRFLREHRSEWADFSVDAFSAASLKAGSYGYTGMRSTRFTGNQAIMSLGHSIEHEEMLEVIRLEGHAPTHEDSFVSRDVHLLQLCTGIDENAVGACSELIFAPIDDMFPEDAPLVPSGFRIALLNSQQGDKQNSMAANRTLDLTSGLEVAPPTTHATGETCPNNRCILTVAFQFPFETGLQDNVAAMARQYIRRVVSAVQALANAISPSSAITAGEAKLSPGSPEALTLAQWICQSYSTYLAAPLLRSDSVIGDMVLKHLWHHPDAILCCSLKTVPVFIFANQAGLDMLETTLVALQDITLDKIFNDSARKNLIAYFAKLMQQGFACMPAGICMSTMGRHASYDQAVAWKVHSEDTSVHCLAFSFINWSFI 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05087 840 CDD homeodomain 22 82 IPR001356 GO:0003677
Tsu02g05087 840 SUPERFAMILY Homeodomain-like 18 83 IPR009057 -
Tsu02g05087 840 Pfam START domain 164 370 IPR002913 GO:0008289
Tsu02g05087 840 Gene3D - 193 369 IPR023393 -
Tsu02g05087 840 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 840 - -
Tsu02g05087 840 ProSiteProfiles START domain profile. 154 382 IPR002913 GO:0008289
Tsu02g05087 840 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 840 IPR044830 GO:0003700
Tsu02g05087 840 SMART HOX_1 19 85 IPR001356 GO:0003677
Tsu02g05087 840 Gene3D - 16 89 - -
Tsu02g05087 840 CDD bZIP 74 113 - -
Tsu02g05087 840 Pfam MEKHLA domain 697 839 IPR013978 -
Tsu02g05087 840 Pfam Homeodomain 22 80 IPR001356 GO:0003677
Tsu02g05087 840 SMART START_1 163 373 IPR002913 GO:0008289
Tsu02g05087 840 MobiDBLite consensus disorder prediction 130 151 - -
Tsu02g05087 840 ProSiteProfiles 'Homeobox' domain profile. 17 81 IPR001356 GO:0003677
Tsu02g05087 840 Coils Coil 87 125 - -
Tsu02g05087 840 SUPERFAMILY Bet v1-like 163 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05087 Tsu-Chr2 59883374 59888869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05087 1 840 Homeobox Transcription Factor Family AT5G60690 73.678 0.0 1304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu02g05087 START 1.1e-44 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05087 K09338 - gmx:100804870 1306.97