Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05078 ATGAACCAGGTGCTTTTTTCTCTAATTATTTGTGGAGTTAAAGCAAACGTAGACAGCAACAATGAAACTCCAACATTTACACCATCCCTTAAAGAATCTCAAGTTAAAAAACAAGGAGGAGGAACAAGGGTTGCCGCCATAGTTGGTGCTACCGGTGCTGCCTTAGTCATCATTGTGATAGTGGTGATTGTCTATATCTGCTTGAGAAGATGTGAAAGATTTAAAAGACAAACATCTGATTCTGCTTCTTCTGTTCCATCACAAGCTGTTGAGATGGGAAGAATCAACAGCTCGCAGTATGTTAATGCATTCTCTCCACAATATATGCAAAACACAAGACTATTAACAATTTTGGAGCTAGAACAAGCTACAGGAAATTTCAGTCAAAGTAGCATCATAGGTGAAGGAAGATTTGGTTTTATATACAAAGGTTTACTTCGAGATGGATCTTTTGTCGCTATAAAAAGGCGCTTATTTGCTCTTACTCGAGATTTCATCCCAGAGGTCAAGCAGATAGCTCAAATTCATCACATTCATCTTGTTAAGCTTATAGGCTATTATGAAGATAACTATCAACAATTACTTGTGTATGAATATCTCTCTAATGGCAATATAGGGAATCATCTTTATGACAATGAAGGTTTACCTATCGGAAAGCTAGACTTGCGGCGCAGGGTATCCATCGCCTTAGGCGCATCCAAAGGACTGGAACATCTTCATAGTTTGGTCCCTCCTATGTTTCACACAAATTTTAGTACAATAAATGTTCTGTTAGATGAAAATTATACTGCCAAAGTTTCTGATTATGGATTCTGCAAATTGCAAACAAAAGTTGATCAGGCAGGTTCATCTTCAAATGTTGACTACTTTCATGATCCAGAGTTGAGCTTATCGCAAAACTATTCGGAGCAGAGTGACGTATACAGTTTTGGAGTGTTTTTACTCGAGTTGGTTACTGGTTGTGAAGTCCATAACAGAAACATGTCAAACCAAGATGAAAATCTAGTATTTCAGGCAAAAAATAGCAATGTTTTGGACAAGTTTATAGACGTAACATTGGGAGAGCAAGAAAAGATTGCTGCTAGAAGAATGATGAAGTTGGCTTTGATATGTGTGGATGTGAGTTATAGAAGACCATCAATGGCACATATTGTGCAAGAATTGGAGAGGATACAAAGAGATATTGCTCCTTTGTATTCTGAAATCAATGAGGAGATTGGTGTTGTGACTCTTGGGAGTGAGCTCTTCCAATAG 1254 0.378 MNQVLFSLIICGVKANVDSNNETPTFTPSLKESQVKKQGGGTRVAAIVGATGAALVIIVIVVIVYICLRRCERFKRQTSDSASSVPSQAVEMGRINSSQYVNAFSPQYMQNTRLLTILELEQATGNFSQSSIIGEGRFGFIYKGLLRDGSFVAIKRRLFALTRDFIPEVKQIAQIHHIHLVKLIGYYEDNYQQLLVYEYLSNGNIGNHLYDNEGLPIGKLDLRRRVSIALGASKGLEHLHSLVPPMFHTNFSTINVLLDENYTAKVSDYGFCKLQTKVDQAGSSSNVDYFHDPELSLSQNYSEQSDVYSFGVFLLELVTGCEVHNRNMSNQDENLVFQAKNSNVLDKFIDVTLGEQEKIAARRMMKLALICVDVSYRRPSMAHIVQELERIQRDIAPLYSEINEEIGVVTLGSELFQ 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05078 417 ProSitePatterns Protein kinases ATP-binding region signature. 133 155 IPR017441 GO:0005524
Tsu02g05078 417 ProSiteProfiles Protein kinase domain profile. 127 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g05078 417 Pfam Protein tyrosine and serine/threonine kinase 130 388 IPR001245 GO:0004672|GO:0006468
Tsu02g05078 417 Gene3D Transferase(Phosphotransferase) domain 1 200 406 - -
Tsu02g05078 417 SUPERFAMILY Protein kinase-like (PK-like) 106 398 IPR011009 -
Tsu02g05078 417 PANTHER PROTEIN KINASE APK1A, CHLOROPLASTIC-LIKE 13 415 - -
Tsu02g05078 417 Gene3D Phosphorylase Kinase; domain 1 87 199 - -
Tsu02g05078 417 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 13 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05078 Tsu-Chr2 59791046 59794222 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05078 47 391 Receptor kinase-like Gene Family AT1G79620 34.072 2.02e-52 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Tsu02g05078 PK_Tyr_Ser-Thr 4.9e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05078 - - aprc:113855951 568.926