Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05073 ATGACTTCTCACCAAAAACATGATCATCAACAACTTTCTTCTTGCAAAAGAACACTTTCTCTTCCACTTCacaagGAGAATCTATTAATGGAAAAACCCTACAAAAAATCAGAAGAAGAAtcttgttcatcatcttcaaaggAATTTGTTGGAATAAAGATGCTGCCATTAACACCAAGTCCAACAGAAAGTAACAAAAGAGTGAATTTTCTTGTGACATCACGTTCAGTTGATGCACCAATTGATAAAAATAGCAATTTAGGGTTTACAACAACAAAGggaaaatcatcatcatcatcatcatcaaatagTAGAAGTATATtaccaaaattgaattttaggTATAATAGGacaacatcaacatcatcatcaacagcAGCATCAGATATTGAAAAGGGTATAATTGGAAATCCAGAAAGTTGTTCTTTTGTAGGTCCTCAAGAAAAGCCTTCAATTTCAGGATCAGTGTCTTTGAGTAAGATATTTAATCCTAAGATTAATAGGACTTCATCATTGCCAGTTGAAGAAATTGGACGTGTTAATACAGAATTTGCTTTTGGTGGATGTCTTGGTGCTTCTCCTTATAGAAGCCAGACGACGATAGCTCGATCTCGTTCTGAGCCTGTAGATACTCAAGAGAAAACCATAAGGAAAATGGATACATTTTTCCGCATTATTCCTTCCACCCCAGGTGTAAAGGAAGCGAAAGAATGGTTAAAAGCATCAACAGAAAAGGATACTGAAAATGACGGCGGCGACAGTGACGGCGGCGAAGATATAGCTGAAGAGGAAGCTGTGTGTAGAATTTGTCTGATTGAGCTATGTGAAGGAGGTGAGACATTGAAGATGGAATGCTGTTGCAAAGGTGAACTTGCGTTGGCTCACCAAGAATGTGCTATTAAGTGGTTTAGTATCAGAGGTAACAAGACCTGTGATGTGTGCAAGGAAGAAGTTCAGAATCTCCCTGTCACTCTTTTAAGGATCCAAAATGTTCAAACTCAGAATACTGGTGCAAGGTCTCAGCAGGACGATGATTTCAGGGTTTGGCAGGAGTTGCCTGTGCTTGTCATTGTCAGCATGCTTGCTTATTTCTGTTTCCTTGAGCAGCTTTTGGTTGGAAAAATGGGAACCAAAGCAATTTTCATTTCTCTTCCCTTTTCCTGTGTACTCGGTCTAGTCTCCGCCATGACATCAACAACCATGGTTAGGAACAGGTTCATCTGGCTTTATGCATCTGCTCAATTTCTTTTGGTGGTTCTCTTTGCGCATATATTTTACCCCTTGTTTCGTAACCTGCAGGTTGGTAAGCAAGCAGTTTTGGCGATCCTTCTTGCATCATTTGCAGGGTTTGGTGTAATGATGAGCGGAAGTTCAGTTTTTACGGAGTTactcagatggagaagaagatggcAGGCTTACTCAGAGCAGCGCCGTGGCTCACAAGCGACGACACAAGAAGGACTATATTCTCAAGGTGCAATTACCCCACAATCAAGTCTTCCCAACCAAAGCCATACTACAGTGCAAATGCAAAATCAACAGAACTCTAACTCATAG 1557 0.3719 MTSHQKHDHQQLSSCKRTLSLPLHKENLLMEKPYKKSEEESCSSSSKEFVGIKMLPLTPSPTESNKRVNFLVTSRSVDAPIDKNSNLGFTTTKGKSSSSSSSNSRSILPKLNFRYNRTTSTSSSTAASDIEKGIIGNPESCSFVGPQEKPSISGSVSLSKIFNPKINRTSSLPVEEIGRVNTEFAFGGCLGASPYRSQTTIARSRSEPVDTQEKTIRKMDTFFRIIPSTPGVKEAKEWLKASTEKDTENDGGDSDGGEDIAEEEAVCRICLIELCEGGETLKMECCCKGELALAHQECAIKWFSIRGNKTCDVCKEEVQNLPVTLLRIQNVQTQNTGARSQQDDDFRVWQELPVLVIVSMLAYFCFLEQLLVGKMGTKAIFISLPFSCVLGLVSAMTSTTMVRNRFIWLYASAQFLLVVLFAHIFYPLFRNLQVGKQAVLAILLASFAGFGVMMSGSSVFTELLRWRRRWQAYSEQRRGSQATTQEGLYSQGAITPQSSLPNQSHTTVQMQNQQNSNS 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05073 518 MobiDBLite consensus disorder prediction 496 518 - -
Tsu02g05073 518 Pfam RING-variant domain 267 314 IPR011016 GO:0008270
Tsu02g05073 518 ProSiteProfiles Zinc finger RING-CH-type profile. 259 321 IPR011016 GO:0008270
Tsu02g05073 518 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 322 IPR013083 -
Tsu02g05073 518 PANTHER OS02G0165000 PROTEIN 16 485 - -
Tsu02g05073 518 CDD RING_CH-C4HC3_MARCH 267 315 - -
Tsu02g05073 518 SMART ringv_2 266 315 IPR011016 GO:0008270
Tsu02g05073 518 MobiDBLite consensus disorder prediction 82 105 - -
Tsu02g05073 518 SUPERFAMILY RING/U-box 263 318 - -
Tsu02g05073 518 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 16 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05073 Tsu-Chr2 59760681 59764966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05073 264 321 C3H Transcription Factor Family AT2G37950 42.373 2.62e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05073 - - cam:101488558 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05073 02 59760681 59764966 Tsu02g03573 02 40155671 40160030 PCT