Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05071 ATGGCAGAATATAGGAGTTTTTCATTTACTAAAATGATTGGCTGCTGGAGTTGTTTTGGGTTGATAAGAAAGCCGACACGTACAAGTACACGTACTAGGCGCCGCGGTGGCATCAAAAATTTTCTCTCCCAAGGGCTATTGACGGATGGAGAAACTGAGTGTGATGAGTTATCATATAGTGGTGACTATACTAGTAACGCAACCAGTGGAGATGATAATGAGCCGCAACCCAATCGTTCAGAGGATATTTTAAACTTTAGAGCAGAGAATGGCATGATTTGTAGGCCTTTTCCTGTTAAGGAGACTGACAAACTTGTTCGATCAGAGGATGAAAACGGGAACAAGATGTTAAATGAGTATATTCGAGAATATAAGATTGGTTCTGGTAGCTATGGCAAAGTGGCTCTTTACCAAAGTAGTATTGATGGAAAGCATTATGCAATTAAGTCCTTTCACAAGTCTCACTTACGGAAGCTTCGAGTTGCTCCATCTGAGACTGCCATGACTGACGTTCTACGTGAGGTACTTATCATGAAAATGCTGGAACATCCTAATATAGTTAATCTCATTGAGGTGATTGATGACCCAGAGTCGGATGACTTCTACATGGTACTGGAATATGTGGAAGGCAAATGGGTTTGTGAGGGTTCAGGTCGACAGTGTGCCATAGGTGAAGAAACTGCTAGGAAATACATGCGTGATATAGTCTCAGGATTAACATATCTTCATGCTCATAATATAGTGCATGGGGATATAAAACCTGATAACCTGTTGATTACTCACAATGGGACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCGTTTGAGACTGGTAACGATGAACTTCGTCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGTTGTTTAgGTCTTACTTATCATGGTAAAGCTTCCGACACATGGGCAGTAGGAGTTACTTTGTACTGTATGATATTGGGTGAATACCCATTTCTCGGAGACACACTGCAAGATACATACGAcagaATAGTCAATAATCCTATAGAAATCCCAGATGACGTAAACCCGCAGTTAAAGAATTTAATAGAAGGATTGCTTTGCAAAGACCCAGAACAAAGGATGACGTTACCTGAAGTTGCCGAGCATGTCTGGGTTATTGGAAATGATGGGCCAATTGGCGAGTACTCGTGTTGGTGCAAACGCAAGAGTGTGGTGAGTGAAGACTTTGGGGAGAGCAATGTGCTTGTTTGA 1239 0.4189 MAEYRSFSFTKMIGCWSCFGLIRKPTRTSTRTRRRGGIKNFLSQGLLTDGETECDELSYSGDYTSNATSGDDNEPQPNRSEDILNFRAENGMICRPFPVKETDKLVRSEDENGNKMLNEYIREYKIGSGSYGKVALYQSSIDGKHYAIKSFHKSHLRKLRVAPSETAMTDVLREVLIMKMLEHPNIVNLIEVIDDPESDDFYMVLEYVEGKWVCEGSGRQCAIGEETARKYMRDIVSGLTYLHAHNIVHGDIKPDNLLITHNGTVKIGDFSVSQAFETGNDELRRSPGTPVFTAPECCLGLTYHGKASDTWAVGVTLYCMILGEYPFLGDTLQDTYDRIVNNPIEIPDDVNPQLKNLIEGLLCKDPEQRMTLPEVAEHVWVIGNDGPIGEYSCWCKRKSVVSEDFGESNVLV 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05071 412 CDD STKc_LKB1_CaMKK 126 381 - -
Tsu02g05071 412 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 7 409 - -
Tsu02g05071 412 Pfam Protein kinase domain 122 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g05071 412 ProSiteProfiles Protein kinase domain profile. 120 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g05071 412 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Tsu02g05071 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Tsu02g05071 412 SMART serkin_6 120 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g05071 412 Gene3D Transferase(Phosphotransferase) domain 1 218 388 - -
Tsu02g05071 412 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 7 409 - -
Tsu02g05071 412 SUPERFAMILY Protein kinase-like (PK-like) 116 389 IPR011009 -
Tsu02g05071 412 Gene3D Phosphorylase Kinase; domain 1 114 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05071 Tsu-Chr2 59733698 59738192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05071 126 387 CBL-interacting serine-threonine protein kinases AT5G10930 33.208 6.69e-44 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Tsu02g05071 Pkinase 8.8e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05071 K00908 - gmx:100807940 696.427