Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05063 ATGACAACAAACCGGTTCATATGCGAAGTATGCAACAAGGGTTTCAAGAGAGACCAAAACCTACAGTTACATAGACGAGGACACAATCTTCCATGGAAGCTTAAGCAGAGAAATCCTCTAGAAATAATAAAGAGGAAGGTGTACGTGTGTCCGGAGAAGAGCTGCGTGCACCACGACCCTAGTAGAGCTCTAGGAGACTTAACAGGGATTAAAAAGCACTTTAGTCGAAAGCACGGTGAGAAGAAGTGGAAGTGTGATAAGTGTTCTAAGAAATATGCAGTTCAATCTGATTGGAAGGCTCATAGTAAGATTTGTGGTACTAGAGAGTACAGATGTGATTGTGGGACACTATTTTCCAGGAAGGACAGCTTCTTAACACATAGAGCCTTTTGTGAATCCTTGGTAGAAAGAAATTCAAGAATAGGTTCAATTCCAGCAGTTTTGTCCAACTATGGAAACAATCTTATGATCAACACTCAACCACAAAGAATTCCTCATCAAGGTTTATTTGGTCTTAATCAAGAATTTGGTGGACCAGGCCCAGAAACATTCATGGCAACAAATTTTCCcaataataataacttattCTCATCATCAGGAACAAACTCTGATTTAGAATTAGTCCTCACAAATAATATGAACACATTTGGTAATTCATTATTACCACAAGGACAATGGAATATGAATTACCGTTACAATGATCATCAATCTGCAGAAGCATCATTTATAAGTAGTGGGGGTTTATCTATGCCTATGTCTATGAATATGATGCATGCTTCTCAAGGAGTACTATTAAAGCTAGAACAACAAGAAGAAGACAAAATTATGCATGCTGATTTGTCTCATTTGTATAATCAGAACCAATTACAAGAAGGTCCAAGTCATCACGTGTCAACAATAGAATCTACAACTACAAATGTTATGATCAATGGTAATAgtagtaatagtaataataataataatgttgctgctttcaataataataatattgttgaaATGAAGAAATTGTTCAACCAAGGAAATGTTCTGCATGATGGAGACAAACATGAATTGAGCTTAACTAGAGATTTTCTTGGTGTTGAGTCATTGAAGAGACCTTTCTTGCAACAACAACAGGAGGTTCCTAGGTTTAATCCAATAGGATCTGTCATGGACATGCAAAATGATCAGTTTGGTGGACACTATTAA 1188 0.3527 MTTNRFICEVCNKGFKRDQNLQLHRRGHNLPWKLKQRNPLEIIKRKVYVCPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFLTHRAFCESLVERNSRIGSIPAVLSNYGNNLMINTQPQRIPHQGLFGLNQEFGGPGPETFMATNFPNNNNLFSSSGTNSDLELVLTNNMNTFGNSLLPQGQWNMNYRYNDHQSAEASFISSGGLSMPMSMNMMHASQGVLLKLEQQEEDKIMHADLSHLYNQNQLQEGPSHHVSTIESTTTNVMINGNSSNSNNNNNVAAFNNNNIVEMKKLFNQGNVLHDGDKHELSLTRDFLGVESLKRPFLQQQQEVPRFNPIGSVMDMQNDQFGGHY 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05063 395 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Tsu02g05063 395 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 373 - -
Tsu02g05063 395 SMART c2h2final6 83 103 IPR013087 -
Tsu02g05063 395 SMART c2h2final6 48 78 IPR013087 -
Tsu02g05063 395 SMART c2h2final6 6 28 IPR013087 -
Tsu02g05063 395 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 1 373 - -
Tsu02g05063 395 Gene3D Classic Zinc Finger 78 140 - -
Tsu02g05063 395 Pfam Zinc-finger double-stranded RNA-binding 6 28 IPR022755 -
Tsu02g05063 395 SUPERFAMILY beta-beta-alpha zinc fingers 5 103 IPR036236 -
Tsu02g05063 395 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Tsu02g05063 395 Gene3D Classic Zinc Finger 1 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05063 Tsu-Chr2 59690279 59693021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05063 1 157 IDZ Gene Family AT3G45260 80.255 1.68e-94 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu02g05063 zf-C2H2_jaz 2.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05063 K25870 - gmx:100815213 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05063 02 59690279 59693021 Tsu02g03556 02 39967264 39969453 PCT