Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05062 ATGGAGGGACAACAAAAGGGATCCAAATCTAGTTACATTTTTCCGCCTGGTTTTCGATTCCATCCTTCTGATGAAGAACTTATAGTTCATTACTTGCAAAACAAAATCAAGTCGCGTCCGCTTCCAGCTTCTATTATAGCTGAAATTGATCTCTATAAGTATAATCCATGGGAGTTACCAAAGAAGTCTTTATTTGGGGAGGGAGAATGGTATTTCTTTAGTCCGAGAGACCGAAAGTACCCGAATGGATTAAGGCCGAATAGAACAGCAGCTTCGGGATACTGGAAAGCAACTGGAACTGATAAGCCAATAATTTCTTCTTGTGGATCAAAGCATATAGGAGTGAAGAAAGCTCTTGTGTTTTATTCAGGTAGACCTCCTAAGGGTGCAAAGACAGATTGGATCATGAATGAGTATAGGTTGGTTGACACAACTACAAAATCATTCAGACTAAAAGGTTCGATGCGGTTGGATGACTGGGTATTGTGCCGGGTTCGACATAGAGGCTACTCACTAAAGAATTTATCAGAGAATCAAGAGATTCCTTGCGAACCAAGCATGCCAGTAAACCTACCAAAAATGGAAGAACAGCGCCCAACAAGCACGAACTTTCGAGCTGACATGATCACAGATTATCAATACAAAGACTATCAGATCATAGCCTCTATTCTTGTTGGTGGAGTTATACCTCCAACTGAGAACATGTCAAGTTTTAGCTTTGATGGAAGCAAAGGAAATAATCTAACTTCAGTTTATGAAGAAGGTTTCAATAAAGTGAATTCTCAAACTTCAATCCCTTCTTTGGAATGTTACTTCAACCCACTGAAAAGGAAATCTATTGATGATGTTGATCAGTTTGAAAATCTAATTTCTTTTAACAGCAGATTCAACACTGTGAACAAAATAGACAAATCTCCTAGCATCGATTTCAAAGCGCTAAACGAATTAAACTTTGCAGAAAGATACCAGTAG 972 0.3868 MEGQQKGSKSSYIFPPGFRFHPSDEELIVHYLQNKIKSRPLPASIIAEIDLYKYNPWELPKKSLFGEGEWYFFSPRDRKYPNGLRPNRTAASGYWKATGTDKPIISSCGSKHIGVKKALVFYSGRPPKGAKTDWIMNEYRLVDTTTKSFRLKGSMRLDDWVLCRVRHRGYSLKNLSENQEIPCEPSMPVNLPKMEEQRPTSTNFRADMITDYQYKDYQIIASILVGGVIPPTENMSSFSFDGSKGNNLTSVYEEGFNKVNSQTSIPSLECYFNPLKRKSIDDVDQFENLISFNSRFNTVNKIDKSPSIDFKALNELNFAERYQ 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05062 323 PANTHER NAC TRANSCRIPTION FACTOR 56 10 307 - -
Tsu02g05062 323 ProSiteProfiles NAC domain profile. 14 168 IPR003441 GO:0003677|GO:0006355
Tsu02g05062 323 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 10 307 - -
Tsu02g05062 323 SUPERFAMILY NAC domain 11 168 IPR036093 GO:0003677|GO:0006355
Tsu02g05062 323 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
Tsu02g05062 323 Gene3D NAC domain 23 171 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05062 Tsu-Chr2 59681193 59682923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05062 10 241 NAC Transcription Factor Family AT1G69490 52.790 6.95e-81 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu02g05062 NAM 1.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05062 - - gmx:100817193 495.352