Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05057 ATGGAAATTGATTTGAATGATGAAGTAACTGAAGTTGAGAACAAGAATAAGAACAAGAAGAATAATGTGTCTTGCAATGGTGAATGTGAGAAAAGTGTTTGTGTTTGcattttatcttcttcttcaccaACATGTTCATCTTCTAGTTCTTCTTCAGctcttgtttcttcttcttatctTGAGCTATGGCATGCTTGTGCTGGTCCTTTAACATCACTTCCAAAGAAAGGAAATGTTGTGGTTTATTTTCCACAAGGTCATTTGGAACAATTTTCATCTTTGTCTCTCTTTTCTCCATTGGAGATTCCAACTTTTGATCTTCAGCCACAAATCTTTTGTAGGGTTGTCAATGTTCAATTACTTGCCAATAAGGAGAATGATGAGGTTTACACACAGGTTACTTTACTTCCACAGGCTGAGTTAGAAGGGATGTGTTTGGACAGCAAAGAGTGTGAAGGGTTGGAAGCAGATGAAGATGGAAATGGAAAAACAACACCTGCAAAGTTAGCTTCTCACATGTTTTGCAAAACACTCACTGCCTCTGATACCAGCACTCATGGAGGGTTTTCTGTTCCTCGTCGAGCTGCTGAAGATTGTTTTCCTCCTTTGGATTATAAGCTTGAGAGACCCTCTCAAGAGCTTGTTGCAAAAGATCTACATGGTGTGGACTGGAAATTTCGCCATATTTACAGAGGTCAGCCGAGGAGGCATCTGCTCACTACCGGCTGGAGTATTTTTGTTAGCCAAAAGAATCTTGTTTCTGGTGATGCAGTGCTCTTTCTAAGGGGTGAAAATGGTGAGTTAAGATTGGGAATCAGAAGAGCTGCTCGACCGAGAAATGGTCTTCCTGAATCAATTGTTGGTAACCAGAGTTGTTCTCCTAGTTTCCTTTCTTCTGTAGCTAATGCTATCTCTGCAAAAAGCATGTTTCATGTTTTCTGCAGTCCAAGAGCAAGTCATGCGGATTTTGTCGTCCCTTACCAAAAGTATGTTAAAAGCATTAGGAGTCCAGTGACCATAGGGACAAGattcaaaatgaaatttgaaatggATGAATCTTCAGAAAGGAGGTTTAGCAGTGGTATAGTGATTGGAATGAGTGATTTGGATCCCTATAAATGGCCCAAATCAAAATGGAGATGCCTAATgGTCAGATGGGATGAGGATATTGAGACTAATCAACAAGATAGAGTCTCTCCTTGGGAGATTGATCCTTCTAATTCTCTCCCTCCCttgaacattcaatcttctcgAAGGCTGAAGAAACTCCGGACGGGTCTTCAAGCTGACTCCACCAGTAACCTTATCAGTGGAGACGGCGGGTTTATGGACTTTGACGAGTCTATAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAAAACAAGTTTTATGTCACTGTATTATGGATGTGACACGGTAACTAATAAGACAGAATTTGATATCAATTCTCTAAGTCATTCTCATACTAATCTTGCATCAACTGGAGCAAGAAAGAATACTTCTGCCGAGTGTACGAGGGTTCACCCTTCTAGTTACGCAGGCTTCACGGAAACGAACCGGTTTCCTATGGTCTTGCAAGGTCAAGAAATATGTCCATTGAGATCCCTGACAGGAAAGGTTGATTTAAACCTTAATTCTTGGGGTAAAACCAATGTCagttacacaaattacaacctGCATCAAGCAACAAAACCGAACTTTCACTCTTTAGGATCAGAAATTCTTCAAAATTCTTATTTTCCTTATGGCCAAGGTAGCAGCATTTTGTGCTCTAAACCCACCAATTTCAACCTAGAGAATGTTCCATTTAACACTCCTTCAGCTCAGATAGGTACATTGAAAAATGAAGTTGGACTATCAAGTTTCGCAATCCAAAACAAGCAGAAGTTGCAGGACAGTATTTCAGCTGCTACTTCTCTAGGTGCAAACATGAGGATTTCAAATGATGAAAATTTTAAGGGGAAGGTAAATCCTTGCAAACTATTTGGATTTTCCTTGTCTGCGGCGGAAACCACCTCACAAAATCTACAGAACTCAGCGAAAAGAAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTAGTTGGACGAGCCGTTGATCTCTCAAGATTGAGCAGCTACAATGATCTGGTGAGTGAACTAGAGAGACTATTTGGCATGGAAGGCCTTTTAAGAGATTCTGATAAGGGATGGAGAATCCTCTACACTGACAGTGAAAATGACATTATGGTTGTTGGGGATGATCCATGGCATGAGTTCTGTGATATGGTATCAAAAATTCATATACATACACAAGAAGAAGTAGAGAAGATGACAATTgggatgatgaatgatgataacCAGAGCTGTTTGGAACAAACACCACTGATTATGGAGGCTTCAAAGTCATCCTCAGTAGGTCAACCAGATTCTTCTCCAATAGTAGTTAGAATCTAG 2433 0.3859 MEIDLNDEVTEVENKNKNKKNNVSCNGECEKSVCVCILSSSSPTCSSSSSSSALVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQFSSLSLFSPLEIPTFDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELEGMCLDSKECEGLEADEDGNGKTTPAKLASHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKLERPSQELVAKDLHGVDWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAARPRNGLPESIVGNQSCSPSFLSSVANAISAKSMFHVFCSPRASHADFVVPYQKYVKSIRSPVTIGTRFKMKFEMDESSERRFSSGIVIGMSDLDPYKWPKSKWRCLMVRWDEDIETNQQDRVSPWEIDPSNSLPPLNIQSSRRLKKLRTGLQADSTSNLISGDGGFMDFDESIRSPKVLQGQEKTSFMSLYYGCDTVTNKTEFDINSLSHSHTNLASTGARKNTSAECTRVHPSSYAGFTETNRFPMVLQGQEICPLRSLTGKVDLNLNSWGKTNVSYTNYNLHQATKPNFHSLGSEILQNSYFPYGQGSSILCSKPTNFNLENVPFNTPSAQIGTLKNEVGLSSFAIQNKQKLQDSISAATSLGANMRISNDENFKGKVNPCKLFGFSLSAAETTSQNLQNSAKRSCTKVHKQGSLVGRAVDLSRLSSYNDLVSELERLFGMEGLLRDSDKGWRILYTDSENDIMVVGDDPWHEFCDMVSKIHIHTQEEVEKMTIGMMNDDNQSCLEQTPLIMEASKSSSVGQPDSSPIVVRI 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05057 810 PANTHER AUXIN RESPONSE FACTOR 39 798 - -
Tsu02g05057 810 Pfam AUX/IAA family 672 766 IPR033389 -
Tsu02g05057 810 ProSiteProfiles B3 DNA-binding domain profile. 174 276 IPR003340 GO:0003677
Tsu02g05057 810 Gene3D - 678 771 - -
Tsu02g05057 810 SUPERFAMILY DNA-binding pseudobarrel domain 166 285 IPR015300 -
Tsu02g05057 810 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 39 798 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu02g05057 810 ProSiteProfiles PB1 domain profile. 682 764 IPR000270 GO:0005515
Tsu02g05057 810 Gene3D - 338 410 - -
Tsu02g05057 810 Pfam B3 DNA binding domain 174 275 IPR003340 GO:0003677
Tsu02g05057 810 Gene3D - 171 276 IPR015300 -
Tsu02g05057 810 SMART B3_2 174 276 IPR003340 GO:0003677
Tsu02g05057 810 CDD B3_DNA 172 274 IPR003340 GO:0003677
Tsu02g05057 810 SUPERFAMILY CAD & PB1 domains 685 762 - -
Tsu02g05057 810 Coils Coil 2 22 - -
Tsu02g05057 810 Pfam Auxin response factor 300 382 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05057 Tsu-Chr2 59653574 59658397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05057 55 810 B3 DNA Binding Superfamily AT5G60450 59.269 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tsu02g05057 B3 8.9e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05057 - - gmx:100812909 1246.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05057 02 59653574 59658397 Tsu02g03552 02 39893349 39898538 PCT