Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu02g05056 | ATGGATTTGGTTTCTAGTTGTAAGGAAAAATTGGCATATTTTCGTGTAAAAGATCTCAAAGATGTGCTTACGCAAGTAGGGCTTTCCAAGCAGGGAAAGAAGCAGGATCTTGTCGACAGAATATTATCTATTCTCTCAGATGAACAAGTTGTCAAAATAAGTGCTAAGAAGAATGCTGTTGATAAAGAACAAGTGGTAAAATTAGTGGATGACACATATAGAAAACTACAGGTAACTGGAACCACTGATACAGCATCAAAGGGGCACGGTGCTTCAGACAGCAGTAATGTGAAAGTTAAACGTGAAGTTGCTGATTCCTTTCAATCAGATACAAAGGTTCGCTGTCTCTGTGGAAGTTCATTGGAAACAGATCTATTGATCAAGTGTGAAGATACAAAATGCCCTGTGTCGCAGCATATCAACTGCGTTATTATTCCGGATAAACCCATTGAAGATCTCCCGCCACTTCCAGATAAATTTTATTGTGAAATATGCCGTCTCAGTCGTGCAGACCCGTTTTCGGTTTCAATGACACACCCTTTATTTCCGGTGAAGTTGATTACAACCCATATTCCAACTGATGGAACCAACCCTGTGCAGAGTGTTGAGAAAACATTCCAACTTACAAGAGCAACCAAGGATTTGTTATTAAAACAAGACTTTGAAATTCAGGCTTGGTGCATGCTTCTGAATGACAAAGTTCCATTCAGGATGCAGTGGCCACAATATGCAGACCTACTGGTCAACgGTTATTCTGTTCGTGCAATTAATAGACCTGGTTCACAATTGCTTGGGGCTAATGGTCGTGATGATGGCCCAATTATCACACCATATACAAAAGAAGGAGTTAACAAGATTTGTTTGACGGGGTGCGACACTCGCATTTTCTGTTTAGGGGTCCGCATTATTAGAAGGCGCACCGTGCAACAGGTCCTGAACTTGATTCCAAAGGAGTCTGATGGTGAGCGTTTTGAAGCTGCTCTTGCACGTGTATGTTGTCGTGTTGGGGGTGGAAATTCAGCTAATGAAGCTGATAGTGACAGTGATCTGGAGGTGGTTTCAGATACTTTTAGCATCAACCTTCGTTGTCCAATGAGTGGTTCAAGAATGAAGATTGCAGGAAGATTCAAACCGTGTGTTCACATGGgttgttttgatcttgaagTTTTTGTCGAAATGAATCAACGTTCAAGAAAGTGGCAATGCCCAATATGTCTCAAAAACTATGCATTGGAGAATATCATTATTGATCCTTATTTCAATCGCATCACTTCTATGATGAAAAACTGTGGGGAAGAGTTTACAGAGGTGGAGGTGAAGCCTGATGGTTATTGGCGTGTCAAAGCTAAGAATGAAAGTGAATGCCGTGAGTTAGGGAATCTTGCTAAATGGCACTCCCCCGACGGGTCCCTCTCTGTTTCTACTAGTGGAGAAGACAAGAGAGCGGAAACTTTGAATGTCAAACAGGAAGGTGTTTCAGACAGTCCTAATCGCTTAAGACTTGGCATTAGGAAAAATTGTAATGGAGTTTGGGAAGTAAGCAAACCCATTGAAACAAACACCTCTTCTGATAATAGGTTGAATGCAAATTTAGGAAATCATGAACTTGTGGTTATTCAAATGAGCAGTAGTGGTACTGGAAGCGGATTGGATGGTGATGATCCAAGCGTAAATCAGAGTGGTGGTGGGCATATAGATTATTCTGCTACCAATGGGATTGAGACGGATTCTGTGCGCCACACTAATGTTAATTCAACTTATGGATATACTATTCCTAGCACTTCTGCTCCAATGGCTGATGCAGATATTATTGTTCTTAGTGATTCTGAAGACGATGATATATTAGTATCTCCTATAGTTGGTCGCAACAATAATCAAACTGGTGATGCAGTTGATGTTTACTCAGCGCCTCCACCTGGAATTACCGATCCATATGCTGGAGATCACAATATTGATGGAAATCCATGCTTGGGAGTTTATGATAATCCCGGTGTTTGTTTTGGGGTTCCCTCTGTCTGGCCATTGCATTCTGGAACTCAGGCAAGCTCAGGATTCCAACTATTTAGTTCTGATGTGGATGTGTCTGATGCATTGGTTCATGGTGATATTAATTGCTCCTCATCACTGAATAGTTATTCATTGGCTCCGGACACTGTTCTGGGATCTAATACTCTAATACCAACCACTGATCAGTCTGACACTGATTTAAATGGTGGCTTGGTTGACAATCCATTGGCATTTGGTGGAAACGATCCCTCACTTCAGATTTTTCTTCCTACAAGACCAGCAGAATCATCTGTGCGGCATGAATTAAGAGACCACACAGATGTGTCGAATGGCGTCTGTACAGAGGATTGGATCTCTCTTAGCCTTGGAGGTGGGGCTGTTGGCAGTAATGGTGACGCTTCTACACCCAATGGTTTGAATTCCGTACCACAAACTACATCCAGAAAAGATGCCACAGATTCTTTGACTAATACTGCTTCTTTGCTTCTTGGTATGAATGATGCTGGTTCTGACAAAGCAAGTAAGAAAAGATCAGAAGGCCCTTTCTCCTTTCCCCGCCAAAAACGTTCAGTAAGGCAGCGCTTGCATCTTTCTATTGATTCAGATTCAGAGTAG | 2622 | 0.4161 | MDLVSSCKEKLAYFRVKDLKDVLTQVGLSKQGKKQDLVDRILSILSDEQVVKISAKKNAVDKEQVVKLVDDTYRKLQVTGTTDTASKGHGASDSSNVKVKREVADSFQSDTKVRCLCGSSLETDLLIKCEDTKCPVSQHINCVIIPDKPIEDLPPLPDKFYCEICRLSRADPFSVSMTHPLFPVKLITTHIPTDGTNPVQSVEKTFQLTRATKDLLLKQDFEIQAWCMLLNDKVPFRMQWPQYADLLVNGYSVRAINRPGSQLLGANGRDDGPIITPYTKEGVNKICLTGCDTRIFCLGVRIIRRRTVQQVLNLIPKESDGERFEAALARVCCRVGGGNSANEADSDSDLEVVSDTFSINLRCPMSGSRMKIAGRFKPCVHMGCFDLEVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSMMKNCGEEFTEVEVKPDGYWRVKAKNESECRELGNLAKWHSPDGSLSVSTSGEDKRAETLNVKQEGVSDSPNRLRLGIRKNCNGVWEVSKPIETNTSSDNRLNANLGNHELVVIQMSSSGTGSGLDGDDPSVNQSGGGHIDYSATNGIETDSVRHTNVNSTYGYTIPSTSAPMADADIIVLSDSEDDDILVSPIVGRNNNQTGDAVDVYSAPPPGITDPYAGDHNIDGNPCLGVYDNPGVCFGVPSVWPLHSGTQASSGFQLFSSDVDVSDALVHGDINCSSSLNSYSLAPDTVLGSNTLIPTTDQSDTDLNGGLVDNPLAFGGNDPSLQIFLPTRPAESSVRHELRDHTDVSNGVCTEDWISLSLGGGAVGSNGDASTPNGLNSVPQTTSRKDATDSLTNTASLLLGMNDAGSDKASKKRSEGPFSFPRQKRSVRQRLHLSIDSDSE | 873 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu02g05056 | 873 | CDD | PHD_Bye1p_SIZ1_like | 114 | 165 | - | - | |
| Tsu02g05056 | 873 | Pfam | SAP domain | 14 | 42 | IPR003034 | - | |
| Tsu02g05056 | 873 | SMART | sap_9 | 11 | 45 | IPR003034 | - | |
| Tsu02g05056 | 873 | ProSiteProfiles | Zinc finger SP-RING-type profile. | 346 | 429 | IPR004181 | GO:0008270 | |
| Tsu02g05056 | 873 | SMART | PHD_3 | 114 | 166 | IPR001965 | - | |
| Tsu02g05056 | 873 | PANTHER | E3 SUMO-PROTEIN LIGASE SIZ1 | 9 | 809 | - | - | |
| Tsu02g05056 | 873 | CDD | SP-RING_Siz_plant | 360 | 408 | - | - | |
| Tsu02g05056 | 873 | MobiDBLite | consensus disorder prediction | 797 | 820 | - | - | |
| Tsu02g05056 | 873 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 103 | 171 | IPR013083 | - | |
| Tsu02g05056 | 873 | Pfam | MIZ/SP-RING zinc finger | 359 | 407 | IPR004181 | GO:0008270 | |
| Tsu02g05056 | 873 | ProSitePatterns | Zinc finger PHD-type signature. | 115 | 165 | IPR019786 | - | |
| Tsu02g05056 | 873 | SUPERFAMILY | SAP domain | 1 | 64 | IPR036361 | - | |
| Tsu02g05056 | 873 | MobiDBLite | consensus disorder prediction | 469 | 493 | - | - | |
| Tsu02g05056 | 873 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 337 | 447 | IPR013083 | - | |
| Tsu02g05056 | 873 | MobiDBLite | consensus disorder prediction | 834 | 873 | - | - | |
| Tsu02g05056 | 873 | ProSiteProfiles | SAP motif profile. | 11 | 45 | IPR003034 | - | |
| Tsu02g05056 | 873 | Gene3D | SAP domain | 1 | 63 | IPR036361 | - | |
| Tsu02g05056 | 873 | PANTHER | ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN | 9 | 809 | - | - | |
| Tsu02g05056 | 873 | SUPERFAMILY | FYVE/PHD zinc finger | 107 | 169 | IPR011011 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu02g05056 | Tsu-Chr2 | 59640148 | 59650145 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu02g05056 | - | - | gmx:100793735 | 1259.97 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Tsu02g05056 | 02 | 59640148 | 59650145 | Tsu02g03548 | 02 | 39869238 | 39881259 | PCT |