Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05045 atggagaatgacacatacaaaattacaaacacCCCAACTTTGGTTCCTCAAGTTGTCATGAGTCCTTGTGCTGCTTGCAAGATTTTGAGAAGAAGATGTGCTGAAAAATGTGTGTTGGCACCTTATTTTCCTCCCACTCAACCTTCCAAATTTACCACTGCTCATCGTGTATTTGGTGCTAGCAACATCATTAAGATCTTACAGGAACTTCCAGAGTCTCAAAGAGCTGATGCAGTGAGCAGCATGGTTTATGAAGCTAGTGCAAGAATTAGAGACCCTGTATATGGAAGTGCAGGTGCAATTTGTCACCTCCAAAAGCAAGTCAATGAACTTCAAGCACAATTAGCTAAGTCACAAGCTGAACTTATTAACATGCAATTACAACAAACCAATCTACTATCTCTTATTTGCATGGAAATGAATGAAACTCCAAATGAATCCTCACCACAAGAATCAGTTGACAATTTCATTTCAAGTCCTAACTACAGCAGTGATTATCaaaataatctcaacttctttGAGGAGAACACTAGCCCAAATTCGTTGTGGGAGCAGCCTCTTTGGACATGA 570 0.3702 MENDTYKITNTPTLVPQVVMSPCAACKILRRRCAEKCVLAPYFPPTQPSKFTTAHRVFGASNIIKILQELPESQRADAVSSMVYEASARIRDPVYGSAGAICHLQKQVNELQAQLAKSQAELINMQLQQTNLLSLICMEMNETPNESSPQESVDNFISSPNYSSDYQNNLNFFEENTSPNSLWEQPLWT 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05045 189 Pfam Lateral organ boundaries (LOB) domain 22 119 IPR004883 -
Tsu02g05045 189 ProSiteProfiles LOB domain profile. 21 122 IPR004883 -
Tsu02g05045 189 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 185 - -
Tsu02g05045 189 Coils Coil 108 128 - -
Tsu02g05045 189 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 14 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05045 Tsu-Chr2 59561474 59564045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05045 18 189 AS2 family AT2G28500 65.054 4.99e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu02g05045 LOB 4.1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05045 - - gmx:100819336 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05045 02 59561474 59564045 Tsu02g03535 02 39691985 39694296 PCT