Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05033 ATGTTAGATCTTAATCTCGATTCAACTCAGAACGATGACTCGATCATGATGATGGAAAAACTTCCAGAAGCTTCTTCAGGaacttcaaattcatcaatcgTGAATGCGGAAGGGTCAAGTAACGTTACCGGAGATGAAGACTCGTGTTCAACACGCGCTGGTGATGGTTTCACTTTTAACTTCGGTATATTGAAAGTTGAAGGAGGAAACGAAGTTGTTGCGACGAAGGAGTTGTTTCCGGTGAGTTCGGGGAATTGGCCGGGAGAGTGTTCAACAATGATGATTCCGGCGAAGAAGAGTTTGATGGATCTCTCGATGGATCATCATCGTGGAGTTGAAAATGGAGTTGTTCAGGTTCAACAACGACCTCAGGTGAAGAAGAGTAGAAGAGGACCAAGGTCTCGAAGTTCTCAGTACAGAGGAGTCACGTTCTACAGAAGAACTGGAAGATGGGAATCGCATATCTGGGATTGTGGGAAGCAAGTTTATTTGGGTGGATTTGACACTGCCCATGCTGCTGCTAGaGCTTATGATCGAGCTGCTATAAAGTTTAGGGGACTTGATGCTGACATTAATTTCAATCTAGTTGAGTATGAGGAAGATATGAATCAGatgaagAATCTTTCAAAGGAGGAATTTGTGCATATACTACGTCGCCACAGTAATGGTTTCTCAAGGGGGAGTTCAAAATACAGAGGAGTAACACTTCACAAATGTGGTCGTTGGGAAGCTCGAATGGGACAACTCCTTGGCAAAAAGGCTTATGACAAAGCAGCTCTAAAATGCAATGGAAGAGAGGCAGTGACTAACTTTGACCCAAGTACATATGAAAATGAGGTGAAACCAGAAGCGATTAATGAAGGTGGTAGTCACAATCTTGACCTTAATTTAGGCATGGCAACTCCAGGACATGAACCTAAAGAAAACAGAGGATATCGTCAATTTCAGGCCGTCCCTTACAACCTGCATCCTGGAAGGAATTTAAAGATGGAGACCAATGTGAATTCAGTTATTGGTGACCCATCTTTGAAAAAGTTGGTTGTAACTGAACAGCGTCCTTCCATGTGGAATGCCACGTTTTCTAGTTTCTTTCCCAATGAGCAGGAAAGAGCAGAGAGAATTGGCATTGATCCTTTAAAAGGAGTCCCAAACTGGTCATGGCAAGGGCATAACAGTCAGGCTACTGCTTCCCCAGTACCACAATTCTCTACTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCACCAAATGCCATCTTTCAAACACAATCTATGAACTCATCAATTCCACAGACACTCTGTTTCACTCCATCCATGGCACCTGGTAGTAGCAATGCATCTCAATACTATTACCAAGTCAAGTCACAGGCACCACCATAA 1386 0.4264 MLDLNLDSTQNDDSIMMMEKLPEASSGTSNSSIVNAEGSSNVTGDEDSCSTRAGDGFTFNFGILKVEGGNEVVATKELFPVSSGNWPGECSTMMIPAKKSLMDLSMDHHRGVENGVVQVQQRPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVEYEEDMNQMKNLSKEEFVHILRRHSNGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKAYDKAALKCNGREAVTNFDPSTYENEVKPEAINEGGSHNLDLNLGMATPGHEPKENRGYRQFQAVPYNLHPGRNLKMETNVNSVIGDPSLKKLVVTEQRPSMWNATFSSFFPNEQERAERIGIDPLKGVPNWSWQGHNSQATASPVPQFSTAASSGFSISATFPPNAIFQTQSMNSSIPQTLCFTPSMAPGSSNASQYYYQVKSQAPP 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05033 461 Gene3D AP2/ERF domain 229 273 IPR036955 GO:0003700|GO:0006355
Tsu02g05033 461 Gene3D AP2/ERF domain 137 196 IPR036955 GO:0003700|GO:0006355
Tsu02g05033 461 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE2 1 434 - -
Tsu02g05033 461 SMART rav1_2 138 200 IPR001471 GO:0003700|GO:0006355
Tsu02g05033 461 SMART rav1_2 230 278 IPR001471 GO:0003700|GO:0006355
Tsu02g05033 461 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 434 - -
Tsu02g05033 461 SUPERFAMILY DNA-binding domain 229 273 IPR016177 GO:0003677
Tsu02g05033 461 ProSiteProfiles AP2/ERF domain profile. 138 194 IPR001471 GO:0003700|GO:0006355
Tsu02g05033 461 SUPERFAMILY DNA-binding domain 137 194 IPR016177 GO:0003677
Tsu02g05033 461 Pfam AP2 domain 138 186 IPR001471 GO:0003700|GO:0006355
Tsu02g05033 461 CDD AP2 229 274 IPR001471 GO:0003700|GO:0006355
Tsu02g05033 461 CDD AP2 138 193 IPR001471 GO:0003700|GO:0006355
Tsu02g05033 461 MobiDBLite consensus disorder prediction 117 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05033 Tsu-Chr2 59401374 59405724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05033 1 420 AP2-EREBP Transcription Factor Family AT5G60120 45.969 2.22e-95 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu02g05033 AP2 2.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05033 K09284 - gmx:100777102 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05033 02 59401374 59405724 Tsu02g03514 02 39386900 39390863 PCT