Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05009 atggAAATGGATGATTTTTCTTCAACTAGAATCAATGATAGTTGTTTTCAGGGTGTAATGGGAAGTGGGTAtggtttatcttcttcttcttctcttgttTTGGATAGAGAAAGAGGTGAACTTGTTGAAGCTGCTGTGAAATTGGAACGAAAAGGTGTTTCACCTGAGAGAAGTATTGAAGCTTTGAAGAATCATAGTGAAgctgagagaagaagaagagcaaGAATTAATTCACATCTTGATACTCTTCGCAGTGTTATTCCTGGTGCTAATAAgTTGGACAAAGCATCCTTACTAGCTGAAGTTATTACACATTTGAAAGAGCTGAAAACAAATGCAGCACAAGCAAGTGAAGGATTAATGATACCAAAAGACAATGATGAGATAAGAGTTGAATCACAAGAAGGTGGCTTAAATGGTTTTCCGTATTCAATTAGAGCATCGCTATGTTGCGATTACAAACCAGGTTTATTGTCTGATATAAGACAAGCACTTGATGCACTTCAGCTTATGATAATAAGGGCTGAGATTGCAACTTTAGAAGGTAGAATGAAGAATGTCTTTGTCATAATTAGCTGCAAAGAACAGAAGTTCGAAGATGCTGAGTATCGACAGTTTCTTGCTGGATCGGTTCATCAAGCTCTTAGATCTGTTCTTGATAGATTTTCTGTTTCACAAGGCGTTTTAGAAACTAGAAAGAGAAGGAGGATTTCTATATTCAGTTCTTCATCTTTAGGAGATTTTTTATAG 750 0.3347 MEMDDFSSTRINDSCFQGVMGSGYGLSSSSSLVLDRERGELVEAAVKLERKGVSPERSIEALKNHSEAERRRRARINSHLDTLRSVIPGANKLDKASLLAEVITHLKELKTNAAQASEGLMIPKDNDEIRVESQEGGLNGFPYSIRASLCCDYKPGLLSDIRQALDALQLMIIRAEIATLEGRMKNVFVIISCKEQKFEDAEYRQFLAGSVHQALRSVLDRFSVSQGVLETRKRRRISIFSSSSLGDFL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05009 249 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 249 - -
Tsu02g05009 249 Pfam Helix-loop-helix DNA-binding domain 64 109 IPR011598 GO:0046983
Tsu02g05009 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 60 109 IPR011598 GO:0046983
Tsu02g05009 249 PANTHER TRANSCRIPTION FACTOR BHLH30 1 249 IPR045847 GO:0003700|GO:0006355
Tsu02g05009 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 61 118 IPR036638 GO:0046983
Tsu02g05009 249 Gene3D - 56 118 IPR036638 GO:0046983
Tsu02g05009 249 SMART finulus 66 115 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05009 Tsu-Chr2 59129913 59131663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05009 47 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 39.286 1.22e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu02g05009 HLH 3.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05009 - - lja:Lj3g3v2848980.1 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05009 02 59129913 59131663 Tsu02g05009 02 59129913 59131663 ECH