Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04996 ATGAGTAATTTCAATGATGATAGAAaccatgatgatgatgaacataATTATAATCCATTTGGAAATTTCTATCATGGATCAAGTCAGAGcaacttcaacaaaaaaatcttGTTAACAGCCATAGTTTCTTTAGTACTTGTATTAATTTTGGTCTTTGCTCTTCATCTCTATGCAAGGTATGTTCTCAAACGTCAAGCTCGTCGGAGAGCCGCCATTCATCAACTCAGCCTCACCGTCGCTCAAGCTCATATACAATTCACCGAACCAGCTAACACTGGACTCGATCGAACCCTCATCGCTACTCTTCCAACTTTCCTCTTCAAAGGTAAACAACAAGacgaaaaacaaaacaactatGTTTTGAATGTTGTTGAATGTGCGGTGTGTTTGAGTATtgtagaagatgaagaaataatGAGGTTGCTTCCTAATTGTAAGCATAGTTTCCATGTGGGTTGCATTGATAAGTGGTTAGCTTCACATTCTACGTGTCCAATTTGTCGAAGCAAGGTTGAACCACGGCTTGAACCAGAGGCACGTGAGGGTCCCACTTTGTTCGAACCACCATTAGAAGGTACATCGGATGGTAATGGTGGTGTTAGTGGGTCCCCCAAAAATATTTCACGGTTGAGCTCTTTTCGGAGAATTCTTATTAGAGATAGATCTTCAACACGAATCCAACCTTCCAGTACTCCATGTGATGATATTATTATTGATCGTGATTTAGAGAGACagtaa 738 0.3645 MSNFNDDRNHDDDEHNYNPFGNFYHGSSQSNFNKKILLTAIVSLVLVLILVFALHLYARYVLKRQARRRAAIHQLSLTVAQAHIQFTEPANTGLDRTLIATLPTFLFKGKQQDEKQNNYVLNVVECAVCLSIVEDEEIMRLLPNCKHSFHVGCIDKWLASHSTCPICRSKVEPRLEPEAREGPTLFEPPLEGTSDGNGGVSGSPKNISRLSSFRRILIRDRSSTRIQPSSTPCDDIIIDRDLERQ 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04996 245 Pfam Ring finger domain 125 168 IPR001841 -
Tsu02g04996 245 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Tsu02g04996 245 PANTHER RING FINGER DOMAIN-CONTAINING 29 245 - -
Tsu02g04996 245 SUPERFAMILY RING/U-box 103 174 - -
Tsu02g04996 245 SMART ring_2 126 167 IPR001841 -
Tsu02g04996 245 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 29 245 - -
Tsu02g04996 245 MobiDBLite consensus disorder prediction 178 207 - -
Tsu02g04996 245 CDD RING-H2_PA-TM-RING 125 168 - -
Tsu02g04996 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 174 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04996 Tsu-Chr2 58992255 58993395 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04996 2 245 C3H Transcription Factor Family AT2G42360 42.578 9.20e-53 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04996 K19038 - gmx:100780265 209.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04996 02 58992255 58993395 Tsu02g04996 02 58992255 58993395 ECH