Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04986 atggaCAGTAGAGATATTTCAAATGGTTTCCTTCATGAAAACACAACAAGTTCATCAAATGAAAATCCTCCAATTTTAAAGAGGAAAAGAAACCTCCCTGGAAATCCAGATCCTGAAGCAGAAGTGATATCTTTATCACCAAAAACATTGATGGCAACAAATAGATTTGTGTGTGAAATTTGTCTAAAAGGTTTTCAAAGGGATCAAAATCTTCAACTTCATCGACGCGGACATAACCTTCCTTGGAAGCTAAAACAAAGAACAAGCAAAGAAATAAGGAAGAGAGTGTATGTTTGTCCAGAAAAGACTTGTGTTCACAATCATCCTTCAAGGGCTTTGGGAGACTTAACTGGGATAAAGAAGCACTTTTGTAGAAAGCACGGTGAGAAAAAGTGGAAGTGTGAGAAGTGCTCAAAGTTTTATGCTGTTCAATCAGATATGAAAGCACATTCAAAAACTTGTGGTACTAgagaatacaaatgtgattgTGGCACTAtattttcaagGAGGGATAGCTTTGTGACTCATAGGGCTTTTTGTGATGCCTTAGCAGAAGAAACAGCTAGAATAAACGGATCAACCAACTCATTATTAGGAATGGGATGTAACAACATTGCTAATTACAACATCATGCAAAATTCACTTCTCCCAAACATAGGAGGAActcatttttcttcaattttcaagCCAAATTCATGCACAAATCAAGTAACAACAAATCAAACATCAAGATCAGGTTTATCCCTTTGGATGTCTCAAACATCACATGACTTGTCTAATAATAGCAATTTGCATGAAACTCATCAAAATTATCATCAAAATTGGGTCTTTGGAAATAAATTCTCTTCTAATAATGAATCTCAAGAGTTAACTAGTTCTGTTTCACTTCCACTTGTCAATAACAACATTGTTAAGGATAATGCAAATGCAAACAACCTTGTTAGTGTTCCTTCTTTGTATAGCTCACAACATCAATCACAATCTAATCATCAAATTACAACCTCAGCAAACATGTCAGCAACTGCTTTGTTACAAAAAGCTGCTCAAATTGGGACAACAACTTCAACTGATTCATTATTCCTTGGAAATTTAGGATTGAGATGTAATAGTCCAAGTCAAGATCATGGTAACAAATTTTGTGGGGTGTTTACAACAAGTGATCACGGGACAGCTGAGTATTATTCAGGTGAATTGTCACAAATGCCCCCCACAAAACGACGACGTCTGCAGAATGAAGAGAGTGTTTGGGGACAAACTAGAGATTTTCTTGGTGTTGGTGGTGCTAACCATTTGCATCCCTTCATCCATCAGAGGATGGATTTGATTTGA 1329 0.3514 MDSRDISNGFLHENTTSSSNENPPILKRKRNLPGNPDPEAEVISLSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKRVYVCPEKTCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKFYAVQSDMKAHSKTCGTREYKCDCGTIFSRRDSFVTHRAFCDALAEETARINGSTNSLLGMGCNNIANYNIMQNSLLPNIGGTHFSSIFKPNSCTNQVTTNQTSRSGLSLWMSQTSHDLSNNSNLHETHQNYHQNWVFGNKFSSNNESQELTSSVSLPLVNNNIVKDNANANNLVSVPSLYSSQHQSQSNHQITTSANMSATALLQKAAQIGTTTSTDSLFLGNLGLRCNSPSQDHGNKFCGVFTTSDHGTAEYYSGELSQMPPTKRRRLQNEESVWGQTRDFLGVGGANHLHPFIHQRMDLI 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04986 442 PANTHER F-BOX ASSOCIATED PROTEIN 20 441 - -
Tsu02g04986 442 Gene3D Classic Zinc Finger 89 180 - -
Tsu02g04986 442 MobiDBLite consensus disorder prediction 8 25 - -
Tsu02g04986 442 SMART c2h2final6 132 152 IPR013087 -
Tsu02g04986 442 SMART c2h2final6 97 127 IPR013087 -
Tsu02g04986 442 SMART c2h2final6 56 78 IPR013087 -
Tsu02g04986 442 MobiDBLite consensus disorder prediction 1 38 - -
Tsu02g04986 442 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 441 - -
Tsu02g04986 442 SUPERFAMILY beta-beta-alpha zinc fingers 55 152 IPR036236 -
Tsu02g04986 442 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Tsu02g04986 442 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04986 Tsu-Chr2 58909908 58912811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04986 22 426 IDZ Gene Family AT1G03840 51.948 2.98e-134 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu02g04986 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04986 K25870 - gmx:100778666 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04986 02 58909908 58912811 Tsu02g04986 02 58909908 58912811 ECH