Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04984 atgacTCAGTGTAGTTACCTTGAAAATAATCATCATAGTGTTCTTATGGAGAGGCGCAAAGATAGCCTAATAAGAACTTGTCCTACTTGTGGTCATCATATCAAATGCCAAGATCAGGGTGCTGGAATTCATGAGTTACCTGGATTACCTGCTGGAGTGAAGTTTGATCCTACTGATCAAGAGATTCTTGAACATTTGGAAGCAAAAGTGAGGTCTGATATTCAAATGCTTCATCCTTTAATTGATGAGTTCATCCCTACTCTTGAAGGAGAGAATGGAATCTGCTGTACTCATCCAGAGAAGTTACCAgGCGTTGGCAAAGACGGACTGATCCGACATTTCTTTCATAGGCCATCAAAAGCATACACAACAGGAACAAGAAAAAGGAGAAAAGTGCACACAGATGAAGATGGAAGTGAAACAAGATGGCACAAAACAGGTAAAACAAGACCAGTTTATATAAATGGCAAGTTAAAAGGTTACAAAAAAATCCTTGTGCTTTACACTAACTACAGAAAGCAAAGAAAGCCAGAGAAAACAAATTGGGTTATGCATCAATATCATCTTGGAAAcaatgaagaagagaaagaaggagAATTAGTAGTTTCCAAAGTTTTCTATCAAACACAACCTAGACAATGTGGTTCATTGATGAAagaatcatcatcattttctgatcaaaaactaattaatgatAATCAAGGTGTTCATGAAGTGGTTAATCATAAAAACAGTGGATTTGTTGAATACTATAATACTTCTTTTATATCTTTTGATCAAGGAGAACAACATAGATCAAACAATGCTCAAGTGGTTTCTCATTTTCCTGTTCATGATGGTAATTCTTTCATTCCTTGA 858 0.3333 MTQCSYLENNHHSVLMERRKDSLIRTCPTCGHHIKCQDQGAGIHELPGLPAGVKFDPTDQEILEHLEAKVRSDIQMLHPLIDEFIPTLEGENGICCTHPEKLPGVGKDGLIRHFFHRPSKAYTTGTRKRRKVHTDEDGSETRWHKTGKTRPVYINGKLKGYKKILVLYTNYRKQRKPEKTNWVMHQYHLGNNEEEKEGELVVSKVFYQTQPRQCGSLMKESSSFSDQKLINDNQGVHEVVNHKNSGFVEYYNTSFISFDQGEQHRSNNAQVVSHFPVHDGNSFIP 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04984 285 ProSiteProfiles NAC domain profile. 49 208 IPR003441 GO:0003677|GO:0006355
Tsu02g04984 285 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 284 - -
Tsu02g04984 285 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 284 IPR044799 GO:0003700
Tsu02g04984 285 Pfam No apical meristem (NAM) protein 50 189 IPR003441 GO:0003677|GO:0006355
Tsu02g04984 285 SUPERFAMILY NAC domain 44 208 IPR036093 GO:0003677|GO:0006355
Tsu02g04984 285 Gene3D NAC domain 58 212 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04984 Tsu-Chr2 58901417 58903664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04984 25 227 NAC Transcription Factor Family AT4G28500 77.451 1.74e-116 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu02g04984 NAM 7.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04984 - - gmx:100791648 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04984 02 58901417 58903664 Tsu02g04984 02 58901417 58903664 ECH