Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04980 ATGCTAGCTGTGTCACCATTAATGTGTAACACAAGAGATGAAAGTCAAAGAGAAATGGAGGAGAATTTATCAATTGGAACATGTGATTTTGCTGATCTTTCCGAAGGAAACTTATTGGAAAGCATCAATTTCGAATTCGATGATGATTTCTTCGTATGCTTCGACGATGGAGATGTGTTACCGGATCTTGAAATGGACCCGGAAATGCTTGCTGAATTTTCCCTCAGCAGCGGGGAGGAATCGGAGATGAATTCATCGGTTACTATTGCGAATAGTAAATCTTTTGATGATGGGAATATTGTtaatattgagaaaaaaaatcaagatgaAGAGAAAGTAAGTTCTTCTTCAGATTCGGGTTCGAGCCGTGTGGAAGAGATAATTAGCAAAAGAGATGAATCTGTGGTGGTGAATCCATTGCCAAAGGAAGGTGAGAAAGGAAGAAAATCATCATCTCAATCAAAGAATAATCATCAAGGGAAGAGAAAAGTGAAGGTGGATTGGACCCCAGAATTGCATAGAAGATTCGTACAAGCAGTAGAGCAGCTAGGTGTGGATAAGGCTGTACCTTCAAGAATTTTGGAAATTATGGGAATTGACTGCCTCACCCGCCATAACATTGCTAGTCACCTTCAAAAATATCGATCACATAGGAAGCATTTGCTAGCACGAGAAGCTGAAGCAGCAAGTTGGAGTCAAAGAAGGCAATTATTTGGAACAAGTAGAGGAGTTGGAGGAAAAAGAGAGATTGTGAATCATCATTGGGTTGCACCAACCATGGGTTTTCCTCCCATAACACCAGTACACCATTTTAGACCTCTACATGTATGGGGTCACCATCCTATGGATCAATCCTATATGCATATGTGGCCTAAATATTCGCCGCACCAGCCACCGGCTAATTGGGCTGCAACTGCACAGGCGGCTCCGCCTCCTAATGCTTCGTATTGGCACCAACGAGCTCCAAATGCCCCAACCGCAGGAACACCATGTTTTCCACAGCCTCTGACAACAACGAGATTCGTCTCTCCAACTGTTCCGGGCATTCTACCTCCCCATGCCATGTACCAAGTAGATCCCGGTGTTGTCGTCCCTACCGGTCAACAATCTCCTCCACCTTTATTAGACTTTCATCCGTCAAATGAAAGCATAGATGCAGCAATTAGTGATGTATTATCAAAACCATATTTGCCATTGCCTCTTGGCCTTAAAGCTCCAGCACTTGAAGGTGTGATGGGTGAATTACAGAAACAAGGAATTCCAAAAATTCCACCATCTTGTGCTTGA 1287 0.4258 MLAVSPLMCNTRDESQREMEENLSIGTCDFADLSEGNLLESINFEFDDDFFVCFDDGDVLPDLEMDPEMLAEFSLSSGEESEMNSSVTIANSKSFDDGNIVNIEKKNQDEEKVSSSSDSGSSRVEEIISKRDESVVVNPLPKEGEKGRKSSSQSKNNHQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRQLFGTSRGVGGKREIVNHHWVAPTMGFPPITPVHHFRPLHVWGHHPMDQSYMHMWPKYSPHQPPANWAATAQAAPPPNASYWHQRAPNAPTAGTPCFPQPLTTTRFVSPTVPGILPPHAMYQVDPGVVVPTGQQSPPPLLDFHPSNESIDAAISDVLSKPYLPLPLGLKAPALEGVMGELQKQGIPKIPPSCA 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04980 428 MobiDBLite consensus disorder prediction 124 152 - -
Tsu02g04980 428 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 428 - -
Tsu02g04980 428 Gene3D - 160 221 - -
Tsu02g04980 428 MobiDBLite consensus disorder prediction 103 164 - -
Tsu02g04980 428 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 160 219 IPR017930 -
Tsu02g04980 428 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 428 IPR044825 GO:0003700|GO:0045893
Tsu02g04980 428 SUPERFAMILY Homeodomain-like 161 220 IPR009057 -
Tsu02g04980 428 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 163 217 IPR006447 GO:0003677
Tsu02g04980 428 Pfam Myb-like DNA-binding domain 166 215 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04980 Tsu-Chr2 58860088 58866416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04980 1 334 G2-like Transcription Factor Family AT5G44190 40.503 1.84e-62 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu02g04980 Myb_DNA-binding 5.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04980 - - gmx:100775671 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04980 02 58860088 58866416 Tsu02g04980 02 58860088 58866416 ECH