Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04978 ATGGCGTCGTTATTCAAGGATCCGGCGAAGATCTCGGCGTATAGAGATAGAAGATTCCCTGGAAATCAAGAAGAGTTTGAACATGCTTTGATTACTTCAACTACCGTTTATGTTGGGAACATGTCGTTTTACACTACTGAAGAACAAATTTATGAACTTTTTTCTCGAGCTGGTGAAATTAAGAAGATTATCATGGGTTTGGATAAGAACACTAAAACTCCTTGCggtttttgctttgttttATATTACTCGCGTGAAGATACTGAGGATGCCTGCAAATATATAAGTGGAACGATACTGGATGATCGCCCTATTCGTGTTGATTTTGACTGGGGATTTCAGGATGGAAGACAATGGGGCCGGGGTCGTAGTGGTGGCCAGGTCCGTGATGAATATCGCACTGATTATGATCCAGGTAGAGGTGGATATGGAAAGTTGGTTCAGAAAGAGTTAGAAGTACAGAGGCATCTTGTAGATTATGGCACTGGTTCTTTGGGATCTTTTCCGCCTGTTATTCCTTCTTCTTATGGTAGACATGGTGGTGGCCATGGTCATGGTGGTGGTTATGGTCATGGTGGCTCCCGTCGGCATGGTAGAGATTACCCTAGGAAGAGATACAGAGACGATGATCGCCACAACACACACGAGCCCTCAAAAAGATCATCAGATCATGAATCTCGGAGGAACTCTGACCATGAATCTAGACCGGAAAAAAATCCACGATTTCGGGAGAGTGGTGATTCTGACGATGATGAGGAAGATGATCGAAAAAGACGGGGTTAA 783 0.4317 MASLFKDPAKISAYRDRRFPGNQEEFEHALITSTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEVQRHLVDYGTGSLGSFPPVIPSSYGRHGGGHGHGGGYGHGGSRRHGRDYPRKRYRDDDRHNTHEPSKRSSDHESRRNSDHESRPEKNPRFRESGDSDDDEEDDRKRRG 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04978 260 CDD RRM_NCBP2 36 113 IPR034148 -
Tsu02g04978 260 Gene3D - 6 152 IPR012677 -
Tsu02g04978 260 PANTHER NUCLEAR CAP-BINDING PROTEIN SUBUNIT 2 1 211 - -
Tsu02g04978 260 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 1 211 IPR027157 GO:0000339|GO:0005846|GO:0045292
Tsu02g04978 260 MobiDBLite consensus disorder prediction 202 260 - -
Tsu02g04978 260 MobiDBLite consensus disorder prediction 163 260 - -
Tsu02g04978 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Tsu02g04978 260 SMART rrm1_1 35 108 IPR000504 GO:0003723
Tsu02g04978 260 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Tsu02g04978 260 SUPERFAMILY RNA-binding domain, RBD 22 144 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04978 Tsu-Chr2 58847326 58851984 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04978 33 109 Eukaryotic Initiation Factors Gene Family AT1G49760 28.571 5.29e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04978 K12883 - gmx:100789535 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04978 02 58847326 58851984 Tsu02g04978 02 58847326 58851984 ECH