Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04967 ATGACTACTATTTGTGCtgaacaacatcaacaacacaAGTTTCATTCTTCTTACCAACCACTCTCCCCCAAAAAATCCTTAAGAGAAATTGATATCCCACCAAGAAAACTTCTCACCCGCCGTAGCACTGCCGCCGACATGTTTTCCGACGACACCATCCTTCAAAAATTCCTTCCACACAATGATTCTGACTCTGATTCCGACGATCCTTACTCGTCGGACCATTTTCGTATGTACGAGTTCAAAGTCCGGCGGTGCACTCGTAGCCGGAGTCACGACTGGACTGACTGTCCATTCGCACACCCCGGCGAAAAAGCACGTCGCCGTGATCCACGGCGGTTTCATTATTCAGGAACAGTTTGTCCTGAGTATCGCCGCGGTAGCTGTAACCGCGGCGATTCTTGTGAATTTGCTCACGGTGTTTTTGAATGCTGGCTTCATCCTGCAAGATATAGAACAGAAGCTTGCAAAGATGGTAAAAATTGTAAGAGAAAAGTTTGTTTCTTTGCACACACTCCTCGTCAATTAAGAATCCTTCCTGTAACTTCTTCATCAAATGAACAATTTTCATGtaacaagaaaaataacaaGATTTTGAATAACCATGTtacttcaaaatcaaacaattgttGTTTGTATTGTCATTGTGGTGGTAATGGTGCTAATAATTCTCCAACTTCAACACTTTTTAGTATGTCACATTTTTCTTCGCCGCCGGCATCACCTCCTATGTCTCCGATGAAGCCAAGAAACAGTGTTTCATCTCTCTCACGCTATGGTTCTTCCATTAATAGTAACAATCTTCGTTACAGAGACATGCTTATTGATCTTTTGGGTTCATTTGATGGTTTAAATTTCAATGAaggttcatcttcttcttgttcttcccCTGTTTCTAGTGCAAAAGCACTTCAGAATCAGATACAGAACAACATGAACTTGGGTTTTCTTGATATTCCTCTTAACTCTGAGGAACATATTCAGAATCAGAATCAGTTTATTgtttcaccttcttcatttgATCAGCAACAACAGCAACATTTCAATATTCTTTCACCAATTCATCAGAATTTGACAGTACCAAGTTTCAATGATGTTGATGACAATAACAAAATGATGTTTTTGGGAAATAATGAGAATAATAAggttgttggtggtggtggtggtgatgctCCTGATCTTGGATGGGTTAATGAGCTTCTGATGTAA 1209 0.3598 MTTICAEQHQQHKFHSSYQPLSPKKSLREIDIPPRKLLTRRSTAADMFSDDTILQKFLPHNDSDSDSDDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPEYRRGSCNRGDSCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVTSSSNEQFSCNKKNNKILNNHVTSKSNNCCLYCHCGGNGANNSPTSTLFSMSHFSSPPASPPMSPMKPRNSVSSLSRYGSSINSNNLRYRDMLIDLLGSFDGLNFNEGSSSSCSSPVSSAKALQNQIQNNMNLGFLDIPLNSEEHIQNQNQFIVSPSSFDQQQQQHFNILSPIHQNLTVPSFNDVDDNNKMMFLGNNENNKVVGGGGGDAPDLGWVNELLM 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04967 402 ProSiteProfiles Zinc finger C3H1-type profile. 116 142 IPR000571 GO:0046872
Tsu02g04967 402 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 120 140 IPR000571 GO:0046872
Tsu02g04967 402 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 29 401 - -
Tsu02g04967 402 Gene3D - 116 179 - -
Tsu02g04967 402 PANTHER UNKEMPT FAMILY MEMBER 29 401 IPR045234 -
Tsu02g04967 402 SMART c3hfinal6 115 141 IPR000571 GO:0046872
Tsu02g04967 402 SMART c3hfinal6 150 173 IPR000571 GO:0046872
Tsu02g04967 402 SUPERFAMILY CCCH zinc finger 114 144 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04967 Tsu-Chr2 58747037 58748472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04967 68 177 C2H2 Transcription Factor Family AT5G07500 69.091 6.48e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu02g04967 zf-CCCH 4.6e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04967 K23047 - gmx:100801371 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04967 02 58747037 58748472 Tsu02g04967 02 58747037 58748472 ECH