Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04965 ATGCCAGCCCAGAAGCGTTCCTTACCTGAGTCAATGAACGATGAAGAAACTTCACAGCTTGTTCATCATTCTCGCCATGTCAAACATCAACAAAACAACCGCGACCCACTCTTCATcgaccaacaacaacaacaacagcaccAAGTCGAacaagaggaagatgaagaagaagaagaagatgatcaGCAAGAGCACGatgaggaggaagaagatgagcaaggagaagaagaggaagatgaagaggacgctgaagatgatgaagatgaagatggacAGCATAATAACGATGACAAGGAAAAATCACAAGATTCCGATGAAGACCCATCttctgatgatgaagaaaagcCTGAATACGTGTACATAGAACTTGCGAATATTCGTAAAGATGTCCAATGTCCAATTTGCCTTGGTATTATTAAGAAAACAAGAACTGTTATGGAATGCTTGCACCGCTTTTGCAGGGAATGCATTGACAAATCAATGCGACTGGGGAACAATGAATGCCCTGCTTGCCGCACACACTGTGCCAGCCGTCGCTCCTTGAGAGATGATCCAAACTATGATGCCCTTATTGCTGTTTTATATCCAAATATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAGGAGGAGAAGAACCGAAATAAGCAGATTCAAGCTTCAATAGCAAAAGTATTTCAACGGCAATCTGAAGCACTAGGCAAGAAACGTAAAGATACACCAAGTTCAAGTTCATTTGTGACAAGATCACAGCGTAATCAAAGAAACGTTCAGTCTAGGAGACAAAGTCAAGCGACTGATGTTCAAGGATCTGAAAATGATGAAAATGGCAATAATGAAAGAGACTCGTCTTCCGGCGATGAGCGCGGCACAGAACGACAGAGAAAACGAAAGAGATGGACCAGGGTTCGTCCCTCTCAGCCCTCATCATCATTGGCAAGTCCTGATGGTGGAAGCGTAGAAAGTGATACAGatataaatagagaaaatcgAGGAACTTCAAGGCAGGTGACAAAACCTAGAAAGCTTACTTGGGGAAGGGGTGGTTTTCGGAGTAACACAAGATATGGAAGTGGTGGTGGTAGCAACAGCAAAAGTTCCCGCAGTGGTCGAATGTCTAGGTTGGTTGACTATCTCAAAAACTTGGATGAAAACACTGCTGAGTTTGAAGTTCATCTCATGTTTATTTCTCCGGACAAAGAAACTACACCAAGTTTGGAGAAGCTTCACCTGAGTTGCCGACCAACTTTGTCTGTCAAGAACCTTTATGAATATGTTGCTAGTCAGACACCTTTGAAAGCTGAAGAAGTTGAGATACTGGCAGTTAAAGGATGCAGCGGTGTAAATCGTGACAAGTCAACTGATGAGAATTCACTCCTCGATTGTGATGAGCTAACATCACTGGTTATAGATCCACAAAAAGATGAACTCGAAGTTTTGCAAGCTCATGAAACTGTGGCAGAGATTAGATCCAAAAGCATATCTAAAAGGGGCCATTTGATTCTGGCATACAAGAGGAAGGTCTAG 1530 0.3804 MPAQKRSLPESMNDEETSQLVHHSRHVKHQQNNRDPLFIDQQQQQQHQVEQEEDEEEEEDDQQEHDEEEEDEQGEEEEDEEDAEDDEDEDGQHNNDDKEKSQDSDEDPSSDDEEKPEYVYIELANIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAVLYPNIEKYEEEELEFREEEKNRNKQIQASIAKVFQRQSEALGKKRKDTPSSSSFVTRSQRNQRNVQSRRQSQATDVQGSENDENGNNERDSSSGDERGTERQRKRKRWTRVRPSQPSSSLASPDGGSVESDTDINRENRGTSRQVTKPRKLTWGRGGFRSNTRYGSGGGSNSKSSRSGRMSRLVDYLKNLDENTAEFEVHLMFISPDKETTPSLEKLHLSCRPTLSVKNLYEYVASQTPLKAEEVEILAVKGCSGVNRDKSTDENSLLDCDELTSLVIDPQKDELEVLQAHETVAEIRSKSISKRGHLILAYKRKV 509
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04965 509 SMART ring_2 132 171 IPR001841 -
Tsu02g04965 509 MobiDBLite consensus disorder prediction 50 92 - -
Tsu02g04965 509 ProSiteProfiles Zinc finger RING-type profile. 132 172 IPR001841 -
Tsu02g04965 509 MobiDBLite consensus disorder prediction 9 23 - -
Tsu02g04965 509 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 202 IPR013083 -
Tsu02g04965 509 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 1 508 - -
Tsu02g04965 509 Pfam Zinc finger, C3HC4 type (RING finger) 131 171 - -
Tsu02g04965 509 Coils Coil 39 78 - -
Tsu02g04965 509 PANTHER OS11G0578200 PROTEIN 1 508 IPR044592 -
Tsu02g04965 509 MobiDBLite consensus disorder prediction 323 337 - -
Tsu02g04965 509 ProSitePatterns Zinc finger RING-type signature. 148 157 IPR017907 -
Tsu02g04965 509 MobiDBLite consensus disorder prediction 1 115 - -
Tsu02g04965 509 CDD RING-HC_RING1_like 132 172 - -
Tsu02g04965 509 MobiDBLite consensus disorder prediction 240 274 - -
Tsu02g04965 509 MobiDBLite consensus disorder prediction 305 322 - -
Tsu02g04965 509 MobiDBLite consensus disorder prediction 231 372 - -
Tsu02g04965 509 Coils Coil 198 221 - -
Tsu02g04965 509 MobiDBLite consensus disorder prediction 275 295 - -
Tsu02g04965 509 MobiDBLite consensus disorder prediction 356 372 - -
Tsu02g04965 509 SUPERFAMILY RING/U-box 119 186 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu02g04965 Tsu-Chr2 58734351 58741518 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04965 126 195 C3H Transcription Factor Family AT3G23060 34.247 1.45e-06 48.9
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04965 K10695 - gmx:100776547 580.482
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04965 02 58734351 58741518 Tsu02g04965 02 58734351 58741518 ECH