Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu02g04965 | ATGCCAGCCCAGAAGCGTTCCTTACCTGAGTCAATGAACGATGAAGAAACTTCACAGCTTGTTCATCATTCTCGCCATGTCAAACATCAACAAAACAACCGCGACCCACTCTTCATcgaccaacaacaacaacaacagcaccAAGTCGAacaagaggaagatgaagaagaagaagaagatgatcaGCAAGAGCACGatgaggaggaagaagatgagcaaggagaagaagaggaagatgaagaggacgctgaagatgatgaagatgaagatggacAGCATAATAACGATGACAAGGAAAAATCACAAGATTCCGATGAAGACCCATCttctgatgatgaagaaaagcCTGAATACGTGTACATAGAACTTGCGAATATTCGTAAAGATGTCCAATGTCCAATTTGCCTTGGTATTATTAAGAAAACAAGAACTGTTATGGAATGCTTGCACCGCTTTTGCAGGGAATGCATTGACAAATCAATGCGACTGGGGAACAATGAATGCCCTGCTTGCCGCACACACTGTGCCAGCCGTCGCTCCTTGAGAGATGATCCAAACTATGATGCCCTTATTGCTGTTTTATATCCAAATATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAGGAGGAGAAGAACCGAAATAAGCAGATTCAAGCTTCAATAGCAAAAGTATTTCAACGGCAATCTGAAGCACTAGGCAAGAAACGTAAAGATACACCAAGTTCAAGTTCATTTGTGACAAGATCACAGCGTAATCAAAGAAACGTTCAGTCTAGGAGACAAAGTCAAGCGACTGATGTTCAAGGATCTGAAAATGATGAAAATGGCAATAATGAAAGAGACTCGTCTTCCGGCGATGAGCGCGGCACAGAACGACAGAGAAAACGAAAGAGATGGACCAGGGTTCGTCCCTCTCAGCCCTCATCATCATTGGCAAGTCCTGATGGTGGAAGCGTAGAAAGTGATACAGatataaatagagaaaatcgAGGAACTTCAAGGCAGGTGACAAAACCTAGAAAGCTTACTTGGGGAAGGGGTGGTTTTCGGAGTAACACAAGATATGGAAGTGGTGGTGGTAGCAACAGCAAAAGTTCCCGCAGTGGTCGAATGTCTAGGTTGGTTGACTATCTCAAAAACTTGGATGAAAACACTGCTGAGTTTGAAGTTCATCTCATGTTTATTTCTCCGGACAAAGAAACTACACCAAGTTTGGAGAAGCTTCACCTGAGTTGCCGACCAACTTTGTCTGTCAAGAACCTTTATGAATATGTTGCTAGTCAGACACCTTTGAAAGCTGAAGAAGTTGAGATACTGGCAGTTAAAGGATGCAGCGGTGTAAATCGTGACAAGTCAACTGATGAGAATTCACTCCTCGATTGTGATGAGCTAACATCACTGGTTATAGATCCACAAAAAGATGAACTCGAAGTTTTGCAAGCTCATGAAACTGTGGCAGAGATTAGATCCAAAAGCATATCTAAAAGGGGCCATTTGATTCTGGCATACAAGAGGAAGGTCTAG | 1530 | 0.3804 | MPAQKRSLPESMNDEETSQLVHHSRHVKHQQNNRDPLFIDQQQQQQHQVEQEEDEEEEEDDQQEHDEEEEDEQGEEEEDEEDAEDDEDEDGQHNNDDKEKSQDSDEDPSSDDEEKPEYVYIELANIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAVLYPNIEKYEEEELEFREEEKNRNKQIQASIAKVFQRQSEALGKKRKDTPSSSSFVTRSQRNQRNVQSRRQSQATDVQGSENDENGNNERDSSSGDERGTERQRKRKRWTRVRPSQPSSSLASPDGGSVESDTDINRENRGTSRQVTKPRKLTWGRGGFRSNTRYGSGGGSNSKSSRSGRMSRLVDYLKNLDENTAEFEVHLMFISPDKETTPSLEKLHLSCRPTLSVKNLYEYVASQTPLKAEEVEILAVKGCSGVNRDKSTDENSLLDCDELTSLVIDPQKDELEVLQAHETVAEIRSKSISKRGHLILAYKRKV | 509 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu02g04965 | 509 | SMART | ring_2 | 132 | 171 | IPR001841 | - | |
| Tsu02g04965 | 509 | MobiDBLite | consensus disorder prediction | 50 | 92 | - | - | |
| Tsu02g04965 | 509 | ProSiteProfiles | Zinc finger RING-type profile. | 132 | 172 | IPR001841 | - | |
| Tsu02g04965 | 509 | MobiDBLite | consensus disorder prediction | 9 | 23 | - | - | |
| Tsu02g04965 | 509 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 83 | 202 | IPR013083 | - | |
| Tsu02g04965 | 509 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED | 1 | 508 | - | - | |
| Tsu02g04965 | 509 | Pfam | Zinc finger, C3HC4 type (RING finger) | 131 | 171 | - | - | |
| Tsu02g04965 | 509 | Coils | Coil | 39 | 78 | - | - | |
| Tsu02g04965 | 509 | PANTHER | OS11G0578200 PROTEIN | 1 | 508 | IPR044592 | - | |
| Tsu02g04965 | 509 | MobiDBLite | consensus disorder prediction | 323 | 337 | - | - | |
| Tsu02g04965 | 509 | ProSitePatterns | Zinc finger RING-type signature. | 148 | 157 | IPR017907 | - | |
| Tsu02g04965 | 509 | MobiDBLite | consensus disorder prediction | 1 | 115 | - | - | |
| Tsu02g04965 | 509 | CDD | RING-HC_RING1_like | 132 | 172 | - | - | |
| Tsu02g04965 | 509 | MobiDBLite | consensus disorder prediction | 240 | 274 | - | - | |
| Tsu02g04965 | 509 | MobiDBLite | consensus disorder prediction | 305 | 322 | - | - | |
| Tsu02g04965 | 509 | MobiDBLite | consensus disorder prediction | 231 | 372 | - | - | |
| Tsu02g04965 | 509 | Coils | Coil | 198 | 221 | - | - | |
| Tsu02g04965 | 509 | MobiDBLite | consensus disorder prediction | 275 | 295 | - | - | |
| Tsu02g04965 | 509 | MobiDBLite | consensus disorder prediction | 356 | 372 | - | - | |
| Tsu02g04965 | 509 | SUPERFAMILY | RING/U-box | 119 | 186 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu02g04965 | Tsu-Chr2 | 58734351 | 58741518 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu02g04965 | 126 | 195 | C3H Transcription Factor Family | AT3G23060 | 34.247 | 1.45e-06 | 48.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu02g04965 | K10695 | - | gmx:100776547 | 580.482 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Tsu02g04965 | 02 | 58734351 | 58741518 | Tsu02g04965 | 02 | 58734351 | 58741518 | ECH |