Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04964 ATGTGGCATGAAAATTTGTTTCAAGTTGTATTTGGTTGTTGGGTTGTTCTGTTTTTACTTTGTCCTGTGTCTGGTCTCAGACCCTTAAAGGATGATCAGTTTCTAGTAAGAAGAAAGGACGAAAGTGTCGTAGGTCCATTTTCAGAATGGAACATAACAGGAACATACAAAGGGACTTGGAAATTTTTAGATACCGCAAACGGCTCTTCAAGATTTCCAGATACCGGAAGAACAAATGGCAATTCCATAATCACATTAAGTAGTACACCTACGACGATAACTGGAGTACATTATGTCCATGGAGTAGTTATATTCGATGATTTGTTTGACGATGAAGATGATGTTGGTGGTGCTCAAATAAGCTTCGAAGGCGTATATATATGGCCTTTTAAACAGCTCAGATTGGTAACAAACAGtggaaaagaaagagagtTGAATCAGTATGAAGATTATATTGTATCGAATCCATATCGTCTACTTGCAGCTTTCTCATCTCAGACACAGCAAGGTTCGTCACGAGATAAGACGTGGAGAAGACAACATTCTATGATGCATGAAATGGAGAAACATTGTAATGCTGAAATTTCCGCGATGGTCTCACACTTGCCATCATCAAAAAATGGCGAGCATGACCAATTTTCTATAGAAGGGTTAATGAAGAGTCCTCCGGTGGATGATGGCGCGAACTGCCTGTCACCATTAATATTAAATGCAACTTCTGTTATAAGAATTGATGTCGACTATAACAAAGCAGTGTACTATACTTTGATGGTTACTTTTGTCTCTTTCTTTCAAGTTCTTCTGTTGAATCGACAAATCATGCATAGCGGCATTCAATCTGGAGCTGCTAAGGTGTCGATATTAATGATCGGTCAACAAGCGTTAATGGATGCGCATTTTACCCTTTTACATCTGACTATAGGAATGATAGTTGAATCCTTGTTGATTGCTTTTGCAACGGTTGCGTTTTTCAAGTTTGTGCTCTTATCAGTATTTGAGACGAGATATCTCGTTGCCATTTGGAAGGCAGGTAATAGGTCTTTGATTAACGGAGAAGGTAACGAGGCTATGAGGCATGAAGTGTGGCGTGAGCTTTCACTTTTACGCATTTGCTTATATGGGACACTGTTAATGGCAGGCATTATAAGCATGTATGGGTTTCATAATCATATGAAACTGATTCTTCTTCTTATGTATTCCTTTTGGATACCTCAGATAATCTGCAATGTTATTCATGATTCACGCAAACCTTTGCATCCTcattatatattaggaataactgTTACTCGGCTCGCAATCccattatatatatttggttggcCGAACAACTTCATGCACATCGAATCAGACAAGAACTGGTGTGTTTGTTTGACTGTGTTTATTGGGCTTCAAGCTGTGTTTCTTCTCCTTCAGCACTATCTTGGATCGCGTTGGTTCATTCCTCGTCAGCTTCTACCTGAGAAATACAACTATCATAGGAAATTTGATCATATTAAAAGACATGCTACAGAATGTGTTATTTGCATGACAGCCATTGATCTTTCTCACAGAACTAATGATTGCATGGTGACACCTTGTGATCATTTCTTCCATTCTGGTTGTGTACAAAGATGGATGGATATAAAGATGGAGTGTCCAACTTGCCGTCGCGCTTTACCATCTTCTTAG 1668 0.3783 MWHENLFQVVFGCWVVLFLLCPVSGLRPLKDDQFLVRRKDESVVGPFSEWNITGTYKGTWKFLDTANGSSRFPDTGRTNGNSIITLSSTPTTITGVHYVHGVVIFDDLFDDEDDVGGAQISFEGVYIWPFKQLRLVTNSGKERELNQYEDYIVSNPYRLLAAFSSQTQQGSSRDKTWRRQHSMMHEMEKHCNAEISAMVSHLPSSKNGEHDQFSIEGLMKSPPVDDGANCLSPLILNATSVIRIDVDYNKAVYYTLMVTFVSFFQVLLLNRQIMHSGIQSGAAKVSILMIGQQALMDAHFTLLHLTIGMIVESLLIAFATVAFFKFVLLSVFETRYLVAIWKAGNRSLINGEGNEAMRHEVWRELSLLRICLYGTLLMAGIISMYGFHNHMKLILLLMYSFWIPQIICNVIHDSRKPLHPHYILGITVTRLAIPLYIFGWPNNFMHIESDKNWCVCLTVFIGLQAVFLLLQHYLGSRWFIPRQLLPEKYNYHRKFDHIKRHATECVICMTAIDLSHRTNDCMVTPCDHFFHSGCVQRWMDIKMECPTCRRALPSS 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04964 555 PANTHER TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 6 554 - -
Tsu02g04964 555 Pfam Ring finger domain 504 549 IPR001841 -
Tsu02g04964 555 SMART ring_2 505 548 IPR001841 -
Tsu02g04964 555 SUPERFAMILY RING/U-box 485 553 - -
Tsu02g04964 555 ProSiteProfiles Zinc finger RING-type profile. 505 549 IPR001841 -
Tsu02g04964 555 PANTHER RING ZINC FINGER PROTEIN 6 554 - -
Tsu02g04964 555 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 485 554 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04964 Tsu-Chr2 58724604 58729353 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04964 492 555 C3H Transcription Factor Family AT1G53010 32.308 5.50e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04964 K23788 - gmx:100780140 801.201