Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04955 ATGGATCATGATCAACAAGGTTGTCCACCACCTTCTTCAATCAAAGTGGAAAGAAAGATTGTTGAGAAAAATAGGAGAAATGAGATGAAGATTCTCTTTTCCAAACTCAACTCTCTTCTCCCTAACTATAATCCCAAggtgatttTGCTACCATTAATTGATCAAGTAGATGAGACTATAAACTACATAAAGAGTTTAGAGACAAATGTAAAGTTGGCaaaggagaaaaaagaaagtttaatGAGAAATAAGAGATCACGTAGTGACTGCTCGAGTTCATCTGGAGCAAAAGGAAGAATAAAATCACCAAAAATTGAGATTCATGAAATGGGCCCCTCTTTACAAATCACTATGACATGTGGGGTTGATGATCAATTCATTTTCTATGAAATTATTCGAATACTGAATGAAGAAAATGTGGAGGTCATTTCTGCAAATTCTTCATTGACAGGAGATTCAATTATTCATATTATACACGCTGAGaTTCCGCAATCTTTGCTTCAATTTGGAGCAACCAAAGTAAGTGAGAGATTGAAAAGGTTTGTGAACGGATCAGAGAGTGAGATAGAAACAGAGCCTCAATTGTGGGATTTTGAAAttggaactcaaagttgggggCTTCTAGATTCTATAGTAACCAAGAGTTTACCAAATCCTTGA 660 0.3288 MDHDQQGCPPPSSIKVERKIVEKNRRNEMKILFSKLNSLLPNYNPKVILLPLIDQVDETINYIKSLETNVKLAKEKKESLMRNKRSRSDCSSSSGAKGRIKSPKIEIHEMGPSLQITMTCGVDDQFIFYEIIRILNEENVEVISANSSLTGDSIIHIIHAEIPQSLLQFGATKVSERLKRFVNGSESEIETEPQLWDFEIGTQSWGLLDSIVTKSLPNP 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04955 219 Coils Coil 63 83 - -
Tsu02g04955 219 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 12 189 - -
Tsu02g04955 219 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 84 IPR036638 GO:0046983
Tsu02g04955 219 Pfam Helix-loop-helix DNA-binding domain 16 67 IPR011598 GO:0046983
Tsu02g04955 219 Gene3D - 13 94 IPR036638 GO:0046983
Tsu02g04955 219 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 66 IPR011598 GO:0046983
Tsu02g04955 219 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 12 189 IPR015660 GO:0003700|GO:0006357
Tsu02g04955 219 MobiDBLite consensus disorder prediction 77 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04955 Tsu-Chr2 58562457 58598949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04955 16 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 39.106 2.97e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu02g04955 HLH 7.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04955 - - mtr:MTR_2g090425 283.878