Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu02g04954 | ATGGTGATTAATGGAGCACTATCAGGAAACTATCTTGGACTGTTTAACAGATCAAGTTCAGGTGATGATTCTAACCATGTTTTTGCTGTTGAATTTGATGATTTTAGAAATGAAGAGTTTGATGAAGTTAATGATAATCATGTTGGTGTTGATTTGAATTCAATGGTTTCTTTGTATTCTGAACCTGCTGAATTTTGGGGTGGAAAAAATGGTGAAGATTtggaaaaattgaaactttCTAGTGGTGAAAATTATCAAGTTTGGATTGAATTTAGGGATTTTGAAATTAATGTTACTATGGCTCCGGCGGGGAAAAGAAAACCTAAAAAGCCCTTGATTAGTAAACCTATtaatttttctagggtttttttGGATGAAATGTATGTTGGATTTTCTGGATCAACTGGGAAAATGGTTGATACTAGTAGAATTTTGGCTTGGAGTTTTAGTCATACAAATTTTTCGATTGGTGATGCTTTGAATACTAAGCATTTACCTAAGAAGGAAGAAAAAGAGGGAGAATATGAAGATTGGGAATTGGAGTATTGGCCACATAAGATTAGCTATAAGGAGATTTGTGATGGAACAGGTGGATTTTGCGAAGAGAATGTGATAGGGATTGGAACAAGTGGGAAAGTATATAAAGGAGTTTTGAAAGGCGGAGAAGAAGTTGCGGTGAAGAGATTCAATCATGATACTCAACATGGAATAAGAGGCTTTTTAGCAGAGATTTCGAGTTTAGGAAGAATGAAACATAGAAACTTGTTGGGTTTCAAAGGTTGGAGTAAAGGAAAAGGAGGGAAATTGATATTGGTTTATGATTACATGGAAAATGAGAGTTTGGACAAAAGAATCTTTGAATGTGAAGAGACTAAGTTGCTTAATTGGGAGCAAAGAATAAGAGTTTTGGAAAATGTAGCTAGTGGAGTTTTATATCTACATGAAGGTTGGGAATTTGAGGTTTTGCATAGGGATATAAAAGCAAGTAATGTATTACTCGACAAAGATATGAATGCGAGAATAGGTGATTTCGGACTTGCTAGGTTGCAGCATCAAGAACTAGTAACTGACACAACAAGAGTGGTAGGGACTTTAGGGTACATGGCACCAGAATTACTCAAAGTTGGTAAACCATCAACTGCAACTGATGTTTATAGTTTCGGAATATTGGTTTTAGAAGTTGTTTGTGGTAGAAGACCAATTGTAATAGATGAGCCACCATTGGTTGAATTGGTATCTTCTCTTATGGAGAAAGGTGAATTGAGTAATGCAATCGATGAACGATTGAAGGGTCAAATAGAGTGTAAATATAACACTGTGGTCGCTGAGAGATTGCTTCATTTGGGTTTGTTATGTGCTAGTTTTGACCCTTGTGTTAGGCCTACAATGAGACAGGTTGTGAAAGCTTTGGAAGGTGTAAAATGCACTGAGTGTAATGAAGAGTGTGTTCATGTGAGTCTTATTGGAAAAATAAACTCAGCAGCATCTTGGTCTAAGAGTTCTACTGATTCTGCGCGTGTAAATTTTCCTACCCTTGATGACATTTTaccatataaatatttttctggAGATTCTTTAAGTGTGTCTTGTTTCAGCTTAGAGCCGATATCTGATTCTCTCTCAGAAGGAAGGTGA | 1635 | 0.3523 | MVINGALSGNYLGLFNRSSSGDDSNHVFAVEFDDFRNEEFDEVNDNHVGVDLNSMVSLYSEPAEFWGGKNGEDLEKLKLSSGENYQVWIEFRDFEINVTMAPAGKRKPKKPLISKPINFSRVFLDEMYVGFSGSTGKMVDTSRILAWSFSHTNFSIGDALNTKHLPKKEEKEGEYEDWELEYWPHKISYKEICDGTGGFCEENVIGIGTSGKVYKGVLKGGEEVAVKRFNHDTQHGIRGFLAEISSLGRMKHRNLLGFKGWSKGKGGKLILVYDYMENESLDKRIFECEETKLLNWEQRIRVLENVASGVLYLHEGWEFEVLHRDIKASNVLLDKDMNARIGDFGLARLQHQELVTDTTRVVGTLGYMAPELLKVGKPSTATDVYSFGILVLEVVCGRRPIVIDEPPLVELVSSLMEKGELSNAIDERLKGQIECKYNTVVAERLLHLGLLCASFDPCVRPTMRQVVKALEGVKCTECNEECVHVSLIGKINSAASWSKSSTDSARVNFPTLDDILPYKYFSGDSLSVSCFSLEPISDSLSEGR | 544 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu02g04954 | 544 | Gene3D | - | 1 | 155 | - | - | |
| Tsu02g04954 | 544 | CDD | lectin_legume_LecRK_Arcelin_ConA | 5 | 150 | IPR001220 | GO:0030246 | |
| Tsu02g04954 | 544 | SUPERFAMILY | Concanavalin A-like lectins/glucanases | 25 | 263 | IPR013320 | - | |
| Tsu02g04954 | 544 | ProSiteProfiles | Protein kinase domain profile. | 199 | 487 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Tsu02g04954 | 544 | PANTHER | - | 5 | 170 | - | - | |
| Tsu02g04954 | 544 | PANTHER | - | 167 | 517 | - | - | |
| Tsu02g04954 | 544 | PANTHER | L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VII.1 | 5 | 170 | - | - | |
| Tsu02g04954 | 544 | PANTHER | L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VII.1 | 167 | 517 | - | - | |
| Tsu02g04954 | 544 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 321 | 333 | IPR008271 | GO:0004672|GO:0006468 | |
| Tsu02g04954 | 544 | Gene3D | Phosphorylase Kinase; domain 1 | 160 | 275 | - | - | |
| Tsu02g04954 | 544 | SMART | serkin_6 | 199 | 470 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Tsu02g04954 | 544 | ProSitePatterns | Protein kinases ATP-binding region signature. | 205 | 227 | IPR017441 | GO:0005524 | |
| Tsu02g04954 | 544 | Pfam | Protein kinase domain | 201 | 468 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Tsu02g04954 | 544 | Gene3D | Transferase(Phosphotransferase) domain 1 | 276 | 489 | - | - | |
| Tsu02g04954 | 544 | SUPERFAMILY | Protein kinase-like (PK-like) | 177 | 471 | IPR011009 | - | |
| Tsu02g04954 | 544 | Pfam | Legume lectin domain | 5 | 153 | IPR001220 | GO:0030246 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu02g04954 | Tsu-Chr2 | 58547767 | 58549682 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu02g04954 | 3 | 422 | Receptor kinase-like Gene Family | AT4G04960 | 51.724 | 5.80e-155 | 453 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_L-LEC | Tsu02g04954 | Pkinase | 3.7e-44 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu02g04954 | - | - | mtr:MTR_2g090410 | 928.702 |