Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04953 ATGCCTCAACTTAAGCAACTTCTCATTCTTCTTCACACTGTAACCATATTTATATGTTGTGTTTCTACTACTGAATTTGTCTATAATACAAACTTCAACTCAACAAATATTAGCCTATATGGAAATGCAACCATTCAAAATTCCATTCTCACTCTCACTAATGGCACTTATTTCTCTATAGGTCGTGCTTTTTACCCTCAAAGAGTACCAACCAAATCACCCAACTCTTCCGCTATTCTTCCCTTTGCTACTTCCTTCATTTTCTCTGTTGCCCCCATCAAAAACATTATCACAGGACATGGTTTTGCCTTCATATTCACACCTTCAAGAGGCCTAAATGGAACAACATCAAACGAGTATATCGGTCTCTTCAATTTTACCAATGAAGGTAATCCTAACAACCATGTTTTTGGAATTGAATTCGATATCATTAGAAACGAAGAATTCAACGATACAAATGGTAATCATGTTGGTATTGATGTAAACTCGCTTAAATCGTTAACTTCACATGAGGCTGGCTACTGGGGTGGAAAATATGATAATGAGTTTAAGGCGTTGAACATTAAAAGTGGAGAAAATTATCAAGTATGGATTGAATTTATGCACTCTAAGATAAACGTTACTATGGTTCCGGCAGGACAAAAGAAGCCTCAAGTTCCTCTCATCAGTGTGGATGTTAACCTTTCTGGGGTTCTTGTGGATGAAACATACGTtggattctgcgcagccacagGGAAAATAGTAGACAGTAGTAAGATTCTTGCTTGGAGCTTTAGCAATACAAACTTTTCAATTGGTGATGCTTTAGTGACAGAAAATTTGCCTTCATTTGTTCCTCATAAGGGATGGTTTTCTGGAGTGAAGGCTATAGCTGTAGGAGTCACTGGTGTTGTCTGTGTCTTAATCATCGGTTGCAGTTGTGCagtgtttttcattttctatagGAGGAACAAGGCAGaggaagaaattgaagagtggGAACTAGAGTACTGGCCACATAGAATTAGTTTCGAAGAGATTCATGCAGCAACAAGAGGGTTCTCTGAAGAGAATGTGATTGCTGTAGGAGGGAATGGAAAGGTATATAAAGGGATTTTGCAAGGAATTGAAGTTGCGGTCAAAAGAATCCCTCAAGAAAGAGAAGATGGAATGAGAGAGTTTTTGGCTGAGGTTTCAAGCATAGGAAGAATGAAACACAGAAATTTAGTAAGACTGAGAGGTTGGTgcaaaaaagaaaagggaaactTGATTCTAGTTTATGACTTCATGAACAATGGAAGTTTAGACAAATGGATCTTTGAGTGTGAAGAAGGAAAGATGTTAACATGGGAAGAGAGGAttcaagttttgaaaaatgtagcCGCGGGGATTCTATACCTGCATGAAGGTTGGGAAGTTAAGGTCTTGCATAGGGATATCAAAGCAAACAATGTTCTACTTGACAAGGAAATGAATGCTAGATTGGGGGATTTTGGTTTGGCTCTTATGCATGAGCATCATGGACAAGTTGCCAGCACAACAAAAGTACTAGGCACATTAGGATACATTGCTCCGGAAGTGATCCGAACCGGAAGAGCGTCGACTATGTCTGATGTGTTTGGCTTCGGTATATTGTTGTTGGAAGTAATATGCGGACGTAGACCTATTGAAGAACATAAGCCAGGGCTAACTGAGTGGGTGAAGTCTCTAATGGTGCTTGGCGAATTGCACAATGCTGTTGATGAAAGGTTGAAGGCTAAAGGAGGATACCCTATTGAGGAAGCTGAGAGATTACTTCATTTGGGTTTGTTGTGTTCAAATTCAGACCCTAGTGTTAGACCAATAATGAGACAGATTGTGAAAATGTTGGAGGGAGAAATGGATAGCATTGAATCTGATGAAGGAAATATGGAGAAGAGTTTActtggaaaaataaaatcaactgCAATGTGGTCTAGAACTGAAAGTGGATACAATGATCACCCTACTTTTGAAGAAATTATGATGTTAATTGATAATTCCAAGACATCTACAAGTGGCTCAACTGCCATACAAGCATCAGATTCAGATCTCATTTGGGAAGGCAgataa 2070 0.3676 MPQLKQLLILLHTVTIFICCVSTTEFVYNTNFNSTNISLYGNATIQNSILTLTNGTYFSIGRAFYPQRVPTKSPNSSAILPFATSFIFSVAPIKNIITGHGFAFIFTPSRGLNGTTSNEYIGLFNFTNEGNPNNHVFGIEFDIIRNEEFNDTNGNHVGIDVNSLKSLTSHEAGYWGGKYDNEFKALNIKSGENYQVWIEFMHSKINVTMVPAGQKKPQVPLISVDVNLSGVLVDETYVGFCAATGKIVDSSKILAWSFSNTNFSIGDALVTENLPSFVPHKGWFSGVKAIAVGVTGVVCVLIIGCSCAVFFIFYRRNKAEEEIEEWELEYWPHRISFEEIHAATRGFSEENVIAVGGNGKVYKGILQGIEVAVKRIPQEREDGMREFLAEVSSIGRMKHRNLVRLRGWCKKEKGNLILVYDFMNNGSLDKWIFECEEGKMLTWEERIQVLKNVAAGILYLHEGWEVKVLHRDIKANNVLLDKEMNARLGDFGLALMHEHHGQVASTTKVLGTLGYIAPEVIRTGRASTMSDVFGFGILLLEVICGRRPIEEHKPGLTEWVKSLMVLGELHNAVDERLKAKGGYPIEEAERLLHLGLLCSNSDPSVRPIMRQIVKMLEGEMDSIESDEGNMEKSLLGKIKSTAMWSRTESGYNDHPTFEEIMMLIDNSKTSTSGSTAIQASDSDLIWEGR 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04953 689 Gene3D Transferase(Phosphotransferase) domain 1 423 639 - -
Tsu02g04953 689 PANTHER - 1 677 - -
Tsu02g04953 689 CDD STKc_IRAK 353 618 - -
Tsu02g04953 689 Pfam Protein kinase domain 349 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04953 689 PANTHER LECTIN RECEPTOR KINASE 1 677 - -
Tsu02g04953 689 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 261 IPR013320 -
Tsu02g04953 689 Gene3D - 20 263 - -
Tsu02g04953 689 SUPERFAMILY Protein kinase-like (PK-like) 323 617 IPR011009 -
Tsu02g04953 689 ProSiteProfiles Protein kinase domain profile. 347 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04953 689 CDD lectin_legume_LecRK_Arcelin_ConA 24 261 IPR001220 GO:0030246
Tsu02g04953 689 Pfam Legume lectin domain 24 262 IPR001220 GO:0030246
Tsu02g04953 689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Tsu02g04953 689 SMART serkin_6 347 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04953 689 Gene3D Phosphorylase Kinase; domain 1 310 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04953 Tsu-Chr2 58544574 58546643 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04953 21 564 Receptor kinase-like Gene Family AT4G04960 57.866 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Tsu02g04953 Pkinase 1.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04953 - - mtr:MTR_2g090410 1143.64