Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04952 ATGGGTTGCATAAATTCCAAGAGTTCAGCTGTGGATGATAGTAGAGAAGGTTTGACAAAGGATTCGGGATCATCTAGAAAAAAGAACTTCGAGAAGAAGGTTTCACGATCGGATTCGAAGAAAAGGGTTGACGGAGTTTTGGAGAAAGATCAGTTATTGGATGGTATTGGTATGAAAGTTTCATTGATTGACAAGAAAGCTAATAATGGTTCGGTGTGGTTGTATGATGATCAGAATGAGACAAAGAAAATGGAGAAATCAGAAGTGGCTGTTGTTGTTGATTGTTCGCGTATTGGAAGGGTTCCAATGGCTTTAGAAGGAGAGCAAGTTGCAGCTGGATGGCCAACTTGGCTTTCGTCTGTTGCTGGTGAAGCTATCAATGGATGGATACCGCGAAGTGCACATACTTTTGAGAAGTATGATAAAATTGGTGAAGGAACTTACAGCACAGTTTATAAGGCACGTGATTTGATTAACCAAAAGGTCGTTGCCTTGAAGCGGGTACGATTTGATAATCTTGATCATGAGAGTGTCAAGTTCATGGCAAGAGAAATCATTTTTCTGCGTAGGCTTGACCATCCAAATGTAATAAAGTTGGAGGGCTTGATAACATCACAGTCGTCTCGCAGCTTGTACCTTGTTTTTGAATATATGGAACATGATCTTACCGGACTTGCAACAGCACCTAGCATTAAGTTTTCTGAACCACAGATTAAATGCTACATGAAGCAGCTTCTTAGTGGATTGGATCATTGCCATAGTCGCGGTATCCTCCACCGTGATATAAAGGGCTCAAATCTTCTCATCGACAATAATGGCATTTTAAAGATTGCAGATTTTggtttggcaaatttttttgaTCCCGGCCAAAGTGTTCCGCTAACCAGCCGGGTAGTAACACTGTGGTATAGATCACCAGAACTTTTACTTGGATCATCAAATTATGGAGTTGCAGTGGATATGTGGAGCACTGGTTGCATACTCGGCGAACTATACTCTGGCAGGCCTGTATTGCCAGGAAAAACCGAGGTTGAGCAATTGCATAGGATTTTTAAACTTTGTGGATCACCATCTGTGGACTATTGGCAAAAACTGCGGCTGCCACATTCTACAGTATTCAGGCCACCACACCATTATAGGAAATGTATTGCCGATACATTTAAAGAATTTCCATCTGCTGCTGTGAGGCTTATAGAGACCCTACTCTCTTTAGATCCTACACTTCGAGGAACAGCAGATACAGCTCTGAAGAACGAGTTCTTTTCATTGGAACCCCTTGCTTGTGATCCATCAACATTGCCAAAATATTCTCCCAGCAAAGAGATTGACACTAAATTGCGGGAAGAATCAAGAGGAAGGCAAGGACCTCTTGAGGGTAAGGAGCAAAAAGTTGGGCCACGAGTTAGACACGAGAAAGAAACTCAGTCATTTGTCGTATCCAGAGCCAATGTCGACTCTCGTCGCATTTCAGGGCAGCAAGGGCAACGTTTTCCAAACATGACGAGCCAGACTGAACAGTTCAACCCTCACAGAGTACCTCCTGTATCTGGATTTATGGGTTTTCGACACAAACACTCAGAAGGTCCTAAAAAGACGGTTAATTATTTCTCGGGGCCTCTTTACCAGAGGCCTTCACATTCAGGGTTACTGGTTCCAGATTCGAGCCGACACAAATATGGAAAAGAAGCTGGTGAGAGGTTTCTTCCTGTTTCAAATAAAGTCAATCTATCAAAACCATCTAGAACTTCATTGTCTGGAAATCAAAAAGTAAGTCCAGCTTCTTTGAGTCCCCAAGATACAACTCAACTACACAAATCTTTAGGGTTGAGTAATGGATCAGAGTCAAGAAGACGGCATGATAGAAAACGCCATTCTCAGATAGTTGATCTCAGCCAAACAGAAGATGGAACGGACGGGCATGCATCCAGCGGAAACAATCTCTATATGTCTGGTCCATTGCTGGCTTCGTCAAACAATATGGATCAGATGCTCAAAGAGCGCGATCGGAAGATCCAAGAATATTCAAGGCGAACCAGAAATAAATAG 2046 0.4223 MGCINSKSSAVDDSREGLTKDSGSSRKKNFEKKVSRSDSKKRVDGVLEKDQLLDGIGMKVSLIDKKANNGSVWLYDDQNETKKMEKSEVAVVVDCSRIGRVPMALEGEQVAAGWPTWLSSVAGEAINGWIPRSAHTFEKYDKIGEGTYSTVYKARDLINQKVVALKRVRFDNLDHESVKFMAREIIFLRRLDHPNVIKLEGLITSQSSRSLYLVFEYMEHDLTGLATAPSIKFSEPQIKCYMKQLLSGLDHCHSRGILHRDIKGSNLLIDNNGILKIADFGLANFFDPGQSVPLTSRVVTLWYRSPELLLGSSNYGVAVDMWSTGCILGELYSGRPVLPGKTEVEQLHRIFKLCGSPSVDYWQKLRLPHSTVFRPPHHYRKCIADTFKEFPSAAVRLIETLLSLDPTLRGTADTALKNEFFSLEPLACDPSTLPKYSPSKEIDTKLREESRGRQGPLEGKEQKVGPRVRHEKETQSFVVSRANVDSRRISGQQGQRFPNMTSQTEQFNPHRVPPVSGFMGFRHKHSEGPKKTVNYFSGPLYQRPSHSGLLVPDSSRHKYGKEAGERFLPVSNKVNLSKPSRTSLSGNQKVSPASLSPQDTTQLHKSLGLSNGSESRRRHDRKRHSQIVDLSQTEDGTDGHASSGNNLYMSGPLLASSNNMDQMLKERDRKIQEYSRRTRNK 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04952 681 MobiDBLite consensus disorder prediction 573 610 - -
Tsu02g04952 681 MobiDBLite consensus disorder prediction 564 681 - -
Tsu02g04952 681 ProSitePatterns Protein kinases ATP-binding region signature. 143 166 IPR017441 GO:0005524
Tsu02g04952 681 PANTHER CELL DIVISION PROTEIN KINASE 1 678 - -
Tsu02g04952 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Tsu02g04952 681 SUPERFAMILY Protein kinase-like (PK-like) 131 422 IPR011009 -
Tsu02g04952 681 CDD STKc_CDK9_like 137 421 - -
Tsu02g04952 681 Pfam Protein kinase domain 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04952 681 MobiDBLite consensus disorder prediction 662 681 - -
Tsu02g04952 681 Gene3D Transferase(Phosphotransferase) domain 1 220 456 - -
Tsu02g04952 681 ProSiteProfiles Protein kinase domain profile. 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04952 681 MobiDBLite consensus disorder prediction 1 41 - -
Tsu02g04952 681 MobiDBLite consensus disorder prediction 432 475 - -
Tsu02g04952 681 MobiDBLite consensus disorder prediction 520 539 - -
Tsu02g04952 681 MobiDBLite consensus disorder prediction 13 41 - -
Tsu02g04952 681 Gene3D Phosphorylase Kinase; domain 1 124 219 - -
Tsu02g04952 681 MobiDBLite consensus disorder prediction 440 475 - -
Tsu02g04952 681 SMART serkin_6 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04952 681 MobiDBLite consensus disorder prediction 487 510 - -
Tsu02g04952 681 PANTHER CYCLIN-DEPENDENT KINASE 1 678 - -
Tsu02g04952 681 MobiDBLite consensus disorder prediction 630 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04952 Tsu-Chr2 58539111 58543036 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04952 129 472 Core Cell Cycle Gene Families AT5G10270 47.091 6.05e-107 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Tsu02g04952 Pkinase 1.9e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04952 - K08819 gmx:100775462 940.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04952 02 58539111 58543036 Tsu02g04952 02 58539111 58543036 ECH