Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04948 ATGTTACAGAAACCTCTATGGTGTGAAAAGACCATGCATTCTTGCAAAGATAGAGAGTATTTCTTTTTGGGACAGTTGCCATATCTAACTGCGGCAGAATGTATTATTTATGAGGGAATAGTTCTTGTTTTGCTATCCATTCATACTTTCTGGCCGTTATCGTACGAAGGGTCCCCTATATTTTGGAAAAGTCCTATTAATTTATTGAAGGCCTTCTGTTTGTTAGTTATCCTTGTTGATATGCTGGCTTATGCTCTGTATATATCCCCAGTGGCTTTTAATTTTCTACCTTTCAGAATTGCACCTTATATCAGGGTTGTTCTTTTCGTTCTGAATATTAGGGAGCTACGAGAAACTGTCATCATCGTGGCTGGAATGCTTGACACATACTTAAATATCTTGGCTTTGGGGCTTCTGTTTCTTGTATTTGCAAGTTGGGTGGCTTATGTGATTTTTGAAGATACAATACAGGGGAAAACCGTATTCACTTCCTATAGTGCAACGTTATATCacatgtttcttttatttaacACAGCAAATAATCCAGATGTTTGGGTTCCTGCATACAAGTCTTCGCGTTGGTCTATCCTGTTTTTCATTCTGTTTGTGCTGATCGGAGTCTACTTTGTTACAAACTTGATTCTTGCCGTTGTTTACGATAGTTTCAAGAGTGAGCTTGTAAAACAAGTTTCTGAGATGGATCGTATGAGAAGAGCTATGTTGGAGAAAGCTTTTAATCTCCTAGATACAAATAAGGATGGATATCTGAAGAAAGATCAATGCATTAGGCTCTTTGAGGAGGTGAACAAGTACAGGACTTTGCCAAAAATCTCCAAGGAAGAATTTGAGTTGATATTTGATGAGCTGGATGACACTCATGATGTAAAGATCAACAAAGATGAATTTGCTGATATTTGCAATGCCATTGCTTTAAGGTTCCAGAAGGAGGATGTGAGTTCTTACTTTGACTATTTAGTATTTTACCATTCATCCACCTCAAAGAGATTGAAAGCATTCGTAAAGAGCACCATGTTTGGATACATAGTGACCTTTGTTCTGATATTGAATCTGGTTGCCGTAATTATTGAGACAACGCTTGACGTAGAAGAAAATTCTGCTCAAAAGGCATGGCAAGTGGTTGAGTTCACTTTCGGGTGGATATATGTAATAGAAATGATACTAAAGGTTTACTCTCATGGATTCGAAAACTATTGGCGGGATGGTCAAAATCGCTTTGATTTTGTGATCACAGTGACAATTGCCATTGGAGAAACTATAGATTTTGCTTCACCTGATGATGGTCTGCCATTTTTCACAAATGGAGAATGGATTCGTTACCTCCTTCTTGCAAGAATGTTGAGATTGATAAGGCTCCTAATGTATGTCCAGCGATTTCGAAGTTTCGTGGCAACTTTCTTAACTCTTATACCAAGTTTGATGCCATACCTCGGGACCATATTTTGCATATTGTGTATTTATTGCTCACTTGGTGTCCAGATTTTTGGTGGATTAGTTAATGCTGGAAACCCAGATTTGGAAGCCACGGACCTTGCTGCTAATGActatttactttttaatttcaatGATTATCCAAATGGAATGGTGACACTATTCAATTTGCTAGTCTCAGAGGTCTGGCAAGAATTGATGGAGAGCTACAAGGATTTAACTGGAACTTCTTGGACCTATGTGTACTTCATTAGCTTCTACTTAATTACCGTTTTGCTGCTTTTGAATTTGATTATTGCTTTTGTCTTGGAGGCATTCTTTGCTGAAATAGAGCTTGAGTCATCAGAAAATTGTGATGGAAATGGCAAGGAAGATGCAGGAGATAGAAATCCGCGGCGTCGAACTCTTGGAACAAAATCACGAAGCCAGAGGGTTGACGCTCTTCTTCATCATATGCTGAGTGCTGAGCTGAGTCAAAATCAGCCTTCCAATACATAA 1947 0.3801 MLQKPLWCEKTMHSCKDREYFFLGQLPYLTAAECIIYEGIVLVLLSIHTFWPLSYEGSPIFWKSPINLLKAFCLLVILVDMLAYALYISPVAFNFLPFRIAPYIRVVLFVLNIRELRETVIIVAGMLDTYLNILALGLLFLVFASWVAYVIFEDTIQGKTVFTSYSATLYHMFLLFNTANNPDVWVPAYKSSRWSILFFILFVLIGVYFVTNLILAVVYDSFKSELVKQVSEMDRMRRAMLEKAFNLLDTNKDGYLKKDQCIRLFEEVNKYRTLPKISKEEFELIFDELDDTHDVKINKDEFADICNAIALRFQKEDVSSYFDYLVFYHSSTSKRLKAFVKSTMFGYIVTFVLILNLVAVIIETTLDVEENSAQKAWQVVEFTFGWIYVIEMILKVYSHGFENYWRDGQNRFDFVITVTIAIGETIDFASPDDGLPFFTNGEWIRYLLLARMLRLIRLLMYVQRFRSFVATFLTLIPSLMPYLGTIFCILCIYCSLGVQIFGGLVNAGNPDLEATDLAANDYLLFNFNDYPNGMVTLFNLLVSEVWQELMESYKDLTGTSWTYVYFISFYLITVLLLLNLIIAFVLEAFFAEIELESSENCDGNGKEDAGDRNPRRRTLGTKSRSQRVDALLHHMLSAELSQNQPSNT 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04948 648 MobiDBLite consensus disorder prediction 599 625 - -
Tsu02g04948 648 Gene3D - 334 468 IPR027359 -
Tsu02g04948 648 SUPERFAMILY EF-hand 226 309 IPR011992 -
Tsu02g04948 648 Gene3D - 469 626 - -
Tsu02g04948 648 ProSiteProfiles EF-hand calcium-binding domain profile. 277 312 IPR002048 GO:0005509
Tsu02g04948 648 Gene3D - 115 222 - -
Tsu02g04948 648 SUPERFAMILY Voltage-gated potassium channels 344 589 - -
Tsu02g04948 648 CDD EFh 240 305 IPR002048 GO:0005509
Tsu02g04948 648 Gene3D - 223 306 - -
Tsu02g04948 648 SMART efh_1 281 309 IPR002048 GO:0005509
Tsu02g04948 648 SMART efh_1 240 268 IPR002048 GO:0005509
Tsu02g04948 648 Pfam Ion transport protein 343 589 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tsu02g04948 648 Pfam Ion transport protein 47 224 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tsu02g04948 648 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 2 645 IPR044581 GO:0005245
Tsu02g04948 648 MobiDBLite consensus disorder prediction 599 618 - -
Tsu02g04948 648 Pfam EF-hand domain pair 241 305 IPR002048 GO:0005509
Tsu02g04948 648 ProSiteProfiles EF-hand calcium-binding domain profile. 236 271 IPR002048 GO:0005509
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04948 3 648 Ion Channels AT4G03560 68.364 0.0 940
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04948 K16900 - gmx:100806160 1051.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04948 02 58495790 58513004 Tsu02g04948 02 58495790 58513004 ECH