Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04943 ATGTCGAACCGGGCCGGTGCCAATGCTAAAGCAAATTGTCACAAAAAATGTTCTAATGATCTTGATTGTGACATATGCTTGGAGCAAGTGAAAGATCCAGTGGTAACTTTTTGTGGTCATCTTTATTGTTGgtcatatatatacaaatgGGTTAATAGCACATCATGGGAACATAATGAGAAACCAGAATGTCCAGTTTGCAAAGCAGAAATTTCAGAATCAACACTTGTTCCATTATATGGTCGTGGccaaacatcatcaacatctCAAGGTGGAAGTGTTGTACCACCAAGACCATCTGGTCCTAGATCATTTGATAGTACTCCAAATGTTTCAGAACAACCTCAGCAAGAACAAATACCAGAGAATGGGTtgcattttttcttaaaatttggtCCATATAAGCTTGATTTTTGGAAATTGCATTGA 429 0.338 MSNRAGANAKANCHKKCSNDLDCDICLEQVKDPVVTFCGHLYCWSYIYKWVNSTSWEHNEKPECPVCKAEISESTLVPLYGRGQTSSTSQGGSVVPPRPSGPRSFDSTPNVSEQPQQEQIPENGLHFFLKFGPYKLDFWKLH 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04943 142 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 8 119 - -
Tsu02g04943 142 MobiDBLite consensus disorder prediction 80 95 - -
Tsu02g04943 142 MobiDBLite consensus disorder prediction 104 119 - -
Tsu02g04943 142 SUPERFAMILY RING/U-box 18 80 - -
Tsu02g04943 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 90 IPR013083 -
Tsu02g04943 142 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 8 119 IPR045103 GO:0005783|GO:0006511|GO:0061630
Tsu02g04943 142 ProSiteProfiles Zinc finger RING-type profile. 23 68 IPR001841 -
Tsu02g04943 142 MobiDBLite consensus disorder prediction 80 119 - -
Tsu02g04943 142 SMART ring_2 23 67 IPR001841 -
Tsu02g04943 142 Pfam Zinc finger, C3HC4 type (RING finger) 23 67 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04943 Tsu-Chr2 58455923 58456351 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04943 20 102 C3H Transcription Factor Family AT4G28270 54.348 3.49e-30 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04943 K10666 - gmx:100786373 112.849