Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04942 ATGTTGAACCGTGCAACTTCTGGTTCTAGTAGAAATGGTTCTAATGTCTTTGACTGCAACATATGCTTGGAGAATGTGCAAGAACCAGTGGTAACTCTTTGTGGTCATCTCTATTGTAGGCCATGTATTGACAAATGGTTTACTACCCAAAATGATAGGAAATCATCACCACCACAATGTCCAGTATGCAAAGCAGAAATTTCAAAACAATCCCTTGTTCCACTATATGCAGGTCGTGGCCAAACAACATCAACTTCTTCTAAAGACAAACCTCATCATCAAGATGGGATTGTTGTACCACCAAGACCACGAGGACCTCGTCGAGAAAAAGCGCCGGAGtgggaTATACCAGTGAGAGATCCTCAACAGGATAGATTGGAGAGGTTGGAGAATATGATGGAACAAATGATGTTATCTCAAAGACAATCACATGGTCGCCTTGAGCATGCGCTGCATGTTCTCTATGGTAAAGTCAGGTATCCAGAGGGTGCAACTGCACCCCCTCAGTCCAATGTAGCACCGCCACTGATTATTAGAAACAACAACACTTTTTCACTCCTCCTATATattctcttcatcttcttctttcttcttcctttcattcattcattccgTTTCCTCTCCGCCAACggtttttcatttttcacaaaCCTCTGTTCTCTCTTCTTCCTTCAATACACACCATCATTTCTCATCTCTATTCAGGTACTATTTGTCGAAGGAAACATTGTAAGACAAAAGGAAATGGCCTTCAATCAGTATTTTGAGGAGGGTGTGGACCGAATTGAGTCCTTGGAAGATAAACCATCTCAGGAAATGTGGAAATGTGCGAGTTCTGAAGCAATTTCGGGCTCTAGCGGCTTTGACTGCAACATATGCCTTGAGTGTGTGCAAGATCCGGTGGTCACTCTTTGCGGTCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTTAATTTCCATGGCCAAATTGAAGATAAGCGAATGGAGAAGCCACAATGTCCAGTATGCAAATCAGAAATTTCAAAGTCATCTCTTGTTCCGCTCTATGGCCGCGGCCAAACTACACCGCCTTCCAAAGGCAATGCTCAACAAGTAGGGAGTGTGATACCACCGAGACCGCTTGGTCCATCATCGTGGATGACTAACTTACCAAGATCATTTGATGCTGCATCTGTTTCACAACATACTTCTCAGGTTTATCATCCTCATTATCTTAACCATACTCAAAGATACGCTTCACCGATGCTTAACACAAGTGGTTTAATGACCAATCCATTGGATACAACTTATGGTGTCTTTGGTGAGATGATATATGCAAGGATCTTCGGTAACCAAGTgacaaacatatatacatacccAAATTCGTATAATCTTACGGGAATTAGTAATCCAAGGATGAGAAGGCATTTGATGCGAGCTGATAGGTCGCTTGGTAGAATCTGTTTCTTCCTCTTTTGTTGCGCAGTTTTGTGTCTTCTCTtattttga 1491 0.4011 MLNRATSGSSRNGSNVFDCNICLENVQEPVVTLCGHLYCRPCIDKWFTTQNDRKSSPPQCPVCKAEISKQSLVPLYAGRGQTTSTSSKDKPHHQDGIVVPPRPRGPRREKAPEWDIPVRDPQQDRLERLENMMEQMMLSQRQSHGRLEHALHVLYGKVRYPEGATAPPQSNVAPPLIIRNNNTFSLLLYILFIFFFLLPFIHSFRFLSANGFSFFTNLCSLFFLQYTPSFLISIQVLFVEGNIVRQKEMAFNQYFEEGVDRIESLEDKPSQEMWKCASSEAISGSSGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNFHGQIEDKRMEKPQCPVCKSEISKSSLVPLYGRGQTTPPSKGNAQQVGSVIPPRPLGPSSWMTNLPRSFDAASVSQHTSQVYHPHYLNHTQRYASPMLNTSGLMTNPLDTTYGVFGEMIYARIFGNQVTNIYTYPNSYNLTGISNPRMRRHLMRADRSLGRICFFLFCCAVLCLLLF 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04942 496 ProSitePatterns Zinc finger RING-type signature. 34 43 IPR017907 -
Tsu02g04942 496 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 251 496 - -
Tsu02g04942 496 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 4 130 - -
Tsu02g04942 496 ProSiteProfiles Zinc finger RING-type profile. 19 64 IPR001841 -
Tsu02g04942 496 CDD RING-HC_AtRMA_like 288 339 - -
Tsu02g04942 496 MobiDBLite consensus disorder prediction 86 113 - -
Tsu02g04942 496 CDD RING-HC_AtRMA_like 17 65 - -
Tsu02g04942 496 ProSitePatterns Zinc finger RING-type signature. 305 314 IPR017907 -
Tsu02g04942 496 SUPERFAMILY RING/U-box 15 78 - -
Tsu02g04942 496 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 78 IPR013083 -
Tsu02g04942 496 MobiDBLite consensus disorder prediction 79 113 - -
Tsu02g04942 496 SMART ring_2 290 337 IPR001841 -
Tsu02g04942 496 SMART ring_2 19 63 IPR001841 -
Tsu02g04942 496 ProSiteProfiles Zinc finger RING-type profile. 290 338 IPR001841 -
Tsu02g04942 496 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 352 IPR013083 -
Tsu02g04942 496 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 251 496 IPR045103 GO:0005783|GO:0006511|GO:0061630
Tsu02g04942 496 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 4 130 IPR045103 GO:0005783|GO:0006511|GO:0061630
Tsu02g04942 496 Pfam Zinc finger, C3HC4 type (RING finger) 19 63 IPR018957 GO:0046872
Tsu02g04942 496 Pfam Zinc finger, C3HC4 type (RING finger) 290 337 IPR018957 GO:0046872
Tsu02g04942 496 SUPERFAMILY RING/U-box 286 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04942 Tsu-Chr2 58433903 58443576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04942 282 496 C3H Transcription Factor Family AT4G28270 39.367 2.38e-43 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04942 K10666 - gmx:100785491 310.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04942 02 58433903 58443576 Tsu02g04942 02 58433903 58443576 ECH