Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04939 ATGAAGCACCATTGTGTCTCTGCCTTGTTTCTTTCAAGCCTCTGCTTCTTTACAGTTGCGCAGGGACAGACACAGCACAGTGTCCACCTTGATACACATTGGTACCCTGGAACTGCAACTTGGTATGGTGAAGCTGAGGGAGATGGTAGCACAGGAGGGGCGTGTGGGTATGGTAATTTGGTGGATGTGAAGCCGTTAAAGGCAAGAGTAGGGGCAGTGGGGCCAGTGTTGTATAAGAAGGGAGAAGGGTGTGGGGAGTGTTATAAGGTGAAGTGTTTGGACCATACCATATGCTCGAAGCGGGCAGTGACGGTTATAATAACGGATGAGTGTCCTGGTTGCCCGTCTGATCGGACACACTTCGACCTTAGTGGTGCTGCTTTTGGTCACATGGCTGTTAAAGGCGAGAATGGTCAACTTAGAAATAAAGGTGAAATTCCAGTTGTTTACCGAAGGTACATTCTCATCATATGA 474 0.4831 MKHHCVSALFLSSLCFFTVAQGQTQHSVHLDTHWYPGTATWYGEAEGDGSTGGACGYGNLVDVKPLKARVGAVGPVLYKKGEGCGECYKVKCLDHTICSKRAVTVIITDECPGCPSDRTHFDLSGAAFGHMAVKGENGQLRNKGEIPVVYRRYILII 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04939 157 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 152 IPR007112 -
Tsu02g04939 157 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Tsu02g04939 157 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Tsu02g04939 157 PRINTS Expansin/Lol pI family signature 143 157 IPR007118 GO:0005576
Tsu02g04939 157 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Tsu02g04939 157 Pfam Lytic transglycolase 75 150 IPR009009 -
Tsu02g04939 157 PANTHER EXPANSIN-B3 13 153 - -
Tsu02g04939 157 Gene3D - 17 153 IPR036908 -
Tsu02g04939 157 SMART dpbb_1 70 150 IPR007112 -
Tsu02g04939 157 PANTHER EXPANSIN-LIKE PROTEIN B1 13 153 - -
Tsu02g04939 157 SUPERFAMILY Barwin-like endoglucanases 29 152 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04939 Tsu-Chr2 58407298 58410654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04939 9 152 Expansin Gene Family AT4G28250 62.667 4.05e-66 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04939 K20628 - gmx:100780112 256.529