Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04938 ATGGATACATTCAAAAGGTTGATTATGGAAAATGTAATGTGGTTGCTTGTTATTGTTATGAGATTAGATGTGTTGATCACATCTTATAGTGGATGGTGTAATTTTCCAAGTGAACATGTTGAGATGTCAGAAGCTGCATTTGCTGAAATTGTCAAGAGAAAATCTGATGTAGTGTCAGTTCAATATagaagTGTTAAATGCAAACGAACCAGTGGCTTGAAATTCACATTGAGTGGAAGTTATAATTTCTATCAAGTCCTGATTAACAATGTAGGGTTGGATGGTGAAGTGGCTGCTGTGAAAGTGAAGGGATTTACAACAACAGCCTCTATTCTTTGA 339 0.351 MDTFKRLIMENVMWLLVIVMRLDVLITSYSGWCNFPSEHVEMSEAAFAEIVKRKSDVVSVQYRSVKCKRTSGLKFTLSGSYNFYQVLINNVGLDGEVAAVKVKGFTTTASIL 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04938 112 PANTHER EXPANSIN-A15 27 106 IPR002963 GO:0009664
Tsu02g04938 112 SUPERFAMILY Barwin-like endoglucanases 28 90 IPR036908 -
Tsu02g04938 112 PRINTS Expansin signature 47 60 IPR002963 GO:0009664
Tsu02g04938 112 PRINTS Expansin signature 71 83 IPR002963 GO:0009664
Tsu02g04938 112 PRINTS Expansin signature 83 104 IPR002963 GO:0009664
Tsu02g04938 112 PRINTS Expansin signature 30 47 IPR002963 GO:0009664
Tsu02g04938 112 PANTHER EXPANSIN-A20 27 106 - -
Tsu02g04938 112 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 24 72 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04938 Tsu-Chr2 58400084 58400920 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04938 25 107 Expansin Gene Family AT4G38210 60.241 3.87e-34 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04938 - - jcu:105636558 126.716