Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04936 ATGCCTCAACTTAATCTACTTTTGATTCTTCTTCACACTGTAAACATGATTATATGTTGTGTTTCCACTACTGAATTTGTCTATAATACAAACTTCAACTCCACAAACATTATGCTATATGGAAATGCCACCATTAAAAAATCCATTCTAACTCTCCTTAATGATACTTCAACTTCCTTCTCAATAGCTCGTGCTTTTTACCCTCACAAAGTACCTACAAAACCACCAAACTCTTCCACTTTTCTCCCCTTTGCTACTTCCTTCATTTTCGCCGTTTCACCTATCAAACACTTTATCCCAGGACATGGCTTTGCCTTCATATTCACACCTTCAAGAGATCTAAATGGAACAACATCGACTGAGTATATCGGACTCCTCGATTTCAAGAATGATGGTAAATCTAACAACCATGTTTTTGGAGTTGAATTTGATATTGTTAAAAACGAACAATTCAACGATACAAATGATAATCATGTTGGTATCGACGTAAACTCGCTTATATCCTTAACTTCACATGAGGCTGGCTACTGGGGTGGAAAATATGACAATGAATTTAAGGTTTTGAAGATAAAAAGTGGAGAAAACTATCAAGTATGGATTGAGTTTAACCATTCTCGTCTAAACGTTACAATGGCTCGGGCAGGACGAAAGAGGCCTCATGTGCCTCTTATCAGTATGAATCTTAACCTTTCTGGGGCTCTTATGGATGAAACTTATGTTGGATTCACCGCAGCGAATGGGTTGAAAAAAGATAGTGTTAAGATTCTTGCTTGGAGCTATAGTAATAAGAATTTTTCAATTGGTGATGCTTTAGTTACAGACAACTTGGCTTCATTTGTCCCTCATAAAGGATGGTTTTCTGGAGCAAAAGCTATGGCTGTAGAAATAACCAGTGTTGTCTGTGTATTAATCATTGGCTGTGCTGTGTTATTCATTCTCCTTAGGGGAAATAAAGAAGAGATTGAAGATTGGGAAATAGATTATTGGCCACATAGGATTAGTTTCCAAGAGATTCATGCAGCAACAGGAGGGTTCTCTGAGGAGAATTTGGTTTTTGCAGGAGGGAACAGAAGTGTACATAAAGGGATATTGCAAGGAGTTGAAGTCGCGGTCAAGAGAATCCCTCACCAAAGAGAAGGGATGAGAGAGTTTTTGGCTGAGGTTTCAAGCTTAGGAAGATTGAAGCACAGAAACTTAGTAGGATTTCGAGGTTGGTGCAAAGAAGACAAAGAAAACTTGATTCTAGTTTATGATTTCATGAACAATGGAAGTTTAGACAAATGGATCTTTGAGTGCGACGAAGGAAAAATGCTAACATGGGAAGAGAGGAttcaagttttgaaaaatgtagcCGTGGGGATTCTATACATGCATGAAGATTGGGAAGTTACGGTCTTGCATAGGGATATTAAAGCGAGCAATGTTCTACTTGACAAGGACATGAATGCTAAATTGGGGGATTTTGGTTTGGCTCTTATGCATGAGCATCATGGACAAGTGGCTAGTACAACGAAAGTACTAGGGACATTAGGATACATTGCTCCGGAAGTGATTCAAATAGGAAGAGCGTCGACTATGTCTGATGTGTTTGGCTTTGGAATATTGGTGTTGGAAGTAATTTGCGGACGAAGACCTATTGAAGAACATAAGCCAGGGATAATCGAACGGGTGGAGTCCCTAATGGTGCTTGATCAATTGCACAATGCTGTTGATGAAAGGTTAAAGGACAAAGGAGGATACCCTATTGAGGAAGCTGAGAGATTGCTTCATTTGGGTTTGTTGTGTTCAAATTCAGACCCTAGTGTTAGACCAACAATGAGACAGATTGTAAAAATGTTGGAGGGAGAAATGGACAGCATGGAATCTGATGAAGAAAATATAGAAACAAGTTTGCTGACAAGAATAAAATCAGCAGCAATGTGGCCTAGAACTGAAAGTGGACTTCAATACAGAGATCACCCTACTTTTGAAGAAGTTCGAATGTTCAGTTATAATTCTAAGACGTCTACAAGTGGCTCAAGTACCATTCCGCAAGGACCACAATCAGATTCAGATATCATTGAAGAAGGCCGGTAA 2076 0.3873 MPQLNLLLILLHTVNMIICCVSTTEFVYNTNFNSTNIMLYGNATIKKSILTLLNDTSTSFSIARAFYPHKVPTKPPNSSTFLPFATSFIFAVSPIKHFIPGHGFAFIFTPSRDLNGTTSTEYIGLLDFKNDGKSNNHVFGVEFDIVKNEQFNDTNDNHVGIDVNSLISLTSHEAGYWGGKYDNEFKVLKIKSGENYQVWIEFNHSRLNVTMARAGRKRPHVPLISMNLNLSGALMDETYVGFTAANGLKKDSVKILAWSYSNKNFSIGDALVTDNLASFVPHKGWFSGAKAMAVEITSVVCVLIIGCAVLFILLRGNKEEIEDWEIDYWPHRISFQEIHAATGGFSEENLVFAGGNRSVHKGILQGVEVAVKRIPHQREGMREFLAEVSSLGRLKHRNLVGFRGWCKEDKENLILVYDFMNNGSLDKWIFECDEGKMLTWEERIQVLKNVAVGILYMHEDWEVTVLHRDIKASNVLLDKDMNAKLGDFGLALMHEHHGQVASTTKVLGTLGYIAPEVIQIGRASTMSDVFGFGILVLEVICGRRPIEEHKPGIIERVESLMVLDQLHNAVDERLKDKGGYPIEEAERLLHLGLLCSNSDPSVRPTMRQIVKMLEGEMDSMESDEENIETSLLTRIKSAAMWPRTESGLQYRDHPTFEEVRMFSYNSKTSTSGSSTIPQGPQSDSDIIEEGR 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04936 691 Pfam Legume lectin domain 24 263 IPR001220 GO:0030246
Tsu02g04936 691 Coils Coil 610 630 - -
Tsu02g04936 691 PANTHER - 1 676 - -
Tsu02g04936 691 Pfam Protein kinase domain 354 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04936 691 PANTHER LECTIN RECEPTOR KINASE 1 676 - -
Tsu02g04936 691 Gene3D - 22 274 - -
Tsu02g04936 691 Gene3D Phosphorylase Kinase; domain 1 315 419 - -
Tsu02g04936 691 SMART serkin_6 345 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04936 691 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 263 IPR013320 -
Tsu02g04936 691 CDD lectin_legume_LecRK_Arcelin_ConA 24 261 IPR001220 GO:0030246
Tsu02g04936 691 MobiDBLite consensus disorder prediction 666 682 - -
Tsu02g04936 691 SUPERFAMILY Protein kinase-like (PK-like) 319 614 IPR011009 -
Tsu02g04936 691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Tsu02g04936 691 MobiDBLite consensus disorder prediction 666 691 - -
Tsu02g04936 691 ProSiteProfiles Protein kinase domain profile. 345 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04936 691 Gene3D Transferase(Phosphotransferase) domain 1 420 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04936 Tsu-Chr2 58388837 58391230 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04936 21 561 Receptor kinase-like Gene Family AT4G04960 52.857 0.0 544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Tsu02g04936 Pkinase 8.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04936 - - mtr:MTR_2g090410 1037.71