Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04934 ATGGCTGCAGCTAAGAACAGTGGAAAATTCAACAAAGATTTTGGTGATGAAACTCACAATAATCACAACAAGGTTATACAAATTGGTGAAAGTCAAGTTAATTGGGAGATTGAAAAAGGTAAAAGTGTTGAATTAAGCTCTTCTCAAAGGTATCATTGGAAGCCCGTTTTTGATGAAGCTTCTATTTCACATAATAGACCTTTTAAGAAAAGCAAAAGCCCTGAACgtgaaaatcaaaatcaaaatcaattttcacctTTTTCTGTTCCTTCTTCAGCTTCTTCTACTTCTACTTCATCTTCAAGACTTGTTTTTCCTTTTGCTTTTGATAATACTTCACAACAATTTGGTACCAATAACAATTTACCTTTTTACCCTTATCCACCACCtacacaaaaccaaaaccagCAACAACAAATGATATCTTTTGGGTCacaatcacaacaacaacagcagcaacagAACAATATTGTTTCATATCCACAAATTTTGtctcaacaacaacagcaacaacatcatcaacagcTACTTCAATATTGGAGTGATGCATTGAATTTAAGTCCAAGAGGAagaatgttgatgatgatgaacaataataacaataggTACTTGGGGCAATATGGTAATAATAATGGACCAATGTTTAGGCCTCAAGTTCAACCTATAAGTACTACAAAACTCTATAGAGGAGTTAGACAAAGACATTGGGGAAAATGGGTAGCTGAAATTCGTCTACCTCGAAATAGAACTCGTCTTTGGTTAGGCACATTTGATACCGCTGAAGATGCTGCTTTAGCCTATGATCGCGAGGCCTTCAAGTTAAGAGGTGAAAATGCAAGGCTCAATTTTCCGGAACTTTTTCTCaacaaagataaagataaagatgaagataaagaaaaagaaaaatcagcACCTTCATCACCATCTccaacaacaacagcagcagaTTCATCTGTTACTTCTTTGACAAGTAACACTGTAACAAAGCAGCCTGAGCCTCCACCGATGCAGACACTTCCAATAGAAGAGTCTAATGAGAATGACTCCGGAATTGGATCGAGTGAAGCTACAGTGAGCGAAGGAGGAGAAGGAGTTTCACAGTCACAAGAATTGGTTTGGAGTGAAATGTCAGCATGGTTTAATGCTATTCCGGCAGCTTGGGGTCCGGGCAGTCCTGTTTGGGATGATAATCTTTTTTCACAGTCACAAACTCCTTTTTCCAATCTCAATCAACATGAAGAATTCAATGATTTTGATCCTCAGATAGGGTCAGGTTCATCTTCCATTAGGCCTTTCTTTTGGAATCATGATCAAAATTAA 1320 0.3189 MAAAKNSGKFNKDFGDETHNNHNKVIQIGESQVNWEIEKGKSVELSSSQRYHWKPVFDEASISHNRPFKKSKSPERENQNQNQFSPFSVPSSASSTSTSSSRLVFPFAFDNTSQQFGTNNNLPFYPYPPPTQNQNQQQQMISFGSQSQQQQQQQNNIVSYPQILSQQQQQQHHQQLLQYWSDALNLSPRGRMLMMMNNNNNRYLGQYGNNNGPMFRPQVQPISTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAALAYDREAFKLRGENARLNFPELFLNKDKDKDEDKEKEKSAPSSPSPTTTAADSSVTSLTSNTVTKQPEPPPMQTLPIEESNENDSGIGSSEATVSEGGEGVSQSQELVWSEMSAWFNAIPAAWGPGSPVWDDNLFSQSQTPFSNLNQHEEFNDFDPQIGSGSSSIRPFFWNHDQN 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04934 439 MobiDBLite consensus disorder prediction 290 304 - -
Tsu02g04934 439 MobiDBLite consensus disorder prediction 64 95 - -
Tsu02g04934 439 CDD AP2 226 286 IPR001471 GO:0003700|GO:0006355
Tsu02g04934 439 MobiDBLite consensus disorder prediction 1 23 - -
Tsu02g04934 439 Gene3D AP2/ERF domain 227 285 IPR036955 GO:0003700|GO:0006355
Tsu02g04934 439 SMART rav1_2 227 290 IPR001471 GO:0003700|GO:0006355
Tsu02g04934 439 MobiDBLite consensus disorder prediction 398 439 - -
Tsu02g04934 439 PRINTS Ethylene responsive element binding protein signature 228 239 IPR001471 GO:0003700|GO:0006355
Tsu02g04934 439 PRINTS Ethylene responsive element binding protein signature 250 266 IPR001471 GO:0003700|GO:0006355
Tsu02g04934 439 MobiDBLite consensus disorder prediction 305 332 - -
Tsu02g04934 439 MobiDBLite consensus disorder prediction 77 95 - -
Tsu02g04934 439 MobiDBLite consensus disorder prediction 340 369 - -
Tsu02g04934 439 MobiDBLite consensus disorder prediction 119 153 - -
Tsu02g04934 439 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 434 - -
Tsu02g04934 439 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 1 434 - -
Tsu02g04934 439 SUPERFAMILY DNA-binding domain 227 285 IPR016177 GO:0003677
Tsu02g04934 439 MobiDBLite consensus disorder prediction 131 153 - -
Tsu02g04934 439 MobiDBLite consensus disorder prediction 290 369 - -
Tsu02g04934 439 ProSiteProfiles AP2/ERF domain profile. 227 284 IPR001471 GO:0003700|GO:0006355
Tsu02g04934 439 Pfam AP2 domain 228 276 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04934 Tsu-Chr2 58377761 58379427 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04934 1 429 AP2-EREBP Transcription Factor Family AT2G20880 39.359 3.10e-63 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu02g04934 AP2 3.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04934 - - gmx:100101898 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04934 02 58377761 58379427 Tsu02g04934 02 58377761 58379427 ECH