Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04922 ATGGTCTCTGGTGAGAAAAGTTCTGCTGGTGCTGTGTATGATGATGTTGCTGACATAGCGCCTGGGAAGGGAGATGTTCACATCAGGGTCAAGGTTATTCGTTTGTGGAAGGTGCCATCATTCCTCAATCCGAGTGAATTTAGCTCAATTGAGATGGTTTTAATGGATGGAAAGGGGGCAAAAATTCATGCTACTATTAGGAAGCAGTTGTTTTGTATGTTTGATTCGAAAATTGAGGAGGGAAAGGCATATGAGATGTCTTATTTCTCTGTTTTCACACAAAGTGGAAACTATCGGACCACTCTTCATTCCTACAAACTTGTCTTCCAGGCCAAGACAAGTGTTGTGTTTGCTGAGGATGTTGGATTTGATCATTCAGGCATTAATGTTACTACTCTTGCAGAGATATGTGCTTTTAATCATGATTACGAGTTCTTGGTTGATGTAATTGGTGTTATGACTGGAATATCTGCTGAACGGGAGTATGTTCGTGATGGGAAGTTAACTAAAATGGTTATTATTGAGCTCACTGATCATAGTGGCAAGTGTGAATGTGCTTTATTTGGTGATTATGCTGAtgagttgaacaaaaaaatgGGGAAAACATCTGGTGGTTTGCCTACTGTGGTTATTCAATTTGCCAAAGTGAAGATTTTTAGAGATAAAGCATCTCTTCAGAATGTTATGAGTACCACTAAGGTCCTCATAAATCCAGATATTCCTGAGGCTGAAGTTTTCAAAAATAGCATTGCAGTTCATGGAATAGAGGATGACCGTTCTGTTCCCATAATTGGTGTACCTGCTAGGCCGACCCTTGAGGAAGAGTTCCTTCGTATGCATCCAACTAAAACTTTGCCTGAGCTTGAAAATTTGTGTGAGGATGGTGTGTTTGTTGTTTGTGCTGAAATTGTGCGCATTGTTGACGGGCATGATTGGTGGTATCCTGCTTGCAAGTGTCACAAGGCTGTTGTTGCTGATTCTAGATCTTATTTTTGTAGTGGATGTCGTCGACATGTTTTTCAAGTTGTTCCTAGGTTCAGGGTGAAGGTTGAGGCTACTGATGGCAAGAGTAGTGGGATCTTTGTGATATTTGATTCTGAAATGAGCTACCTTATGGAGAGGTCATGTTCTTATTTTGTGGCTCAAAGCAAgGCAAACAGTTCTGGTACTCATCCAATTGAGTTTGATTGTCTTGTTGGAAAGAAAATGTTACTATCGGTTGATAAGGCAGTAAAGCAGGGAGGTTTGTCTGATGGTTCTCATCGGGTTAGGAGGGTTTGCATGGATCCTACAATTATTGACAAGTTTTGTGCTCAAGGTTCTTACTTTACCCCAACAAAGtgtATCTCTTCTCCTGTTGATTTGGATTCCGATGGTTTGTCTGATGAAcctgatgatgatggtgattcCGACTCAATTGAATTTTTGAAGGATTTGATTGTTGTCCCACCTCCTTCTTCGGCCACCCCTGCAAAGAATGTTGTACGTGTTGGTCTTAAGAGAAATTTGAACAAGGCATTTGAAATGTTCCCAAGCCTCCTGTGTGTTATTAGGCCACTTGAATGGGCACTTAAATAA 1578 0.3973 MVSGEKSSAGAVYDDVADIAPGKGDVHIRVKVIRLWKVPSFLNPSEFSSIEMVLMDGKGAKIHATIRKQLFCMFDSKIEEGKAYEMSYFSVFTQSGNYRTTLHSYKLVFQAKTSVVFAEDVGFDHSGINVTTLAEICAFNHDYEFLVDVIGVMTGISAEREYVRDGKLTKMVIIELTDHSGKCECALFGDYADELNKKMGKTSGGLPTVVIQFAKVKIFRDKASLQNVMSTTKVLINPDIPEAEVFKNSIAVHGIEDDRSVPIIGVPARPTLEEEFLRMHPTKTLPELENLCEDGVFVVCAEIVRIVDGHDWWYPACKCHKAVVADSRSYFCSGCRRHVFQVVPRFRVKVEATDGKSSGIFVIFDSEMSYLMERSCSYFVAQSKANSSGTHPIEFDCLVGKKMLLSVDKAVKQGGLSDGSHRVRRVCMDPTIIDKFCAQGSYFTPTKCISSPVDLDSDGLSDEPDDDGDSDSIEFLKDLIVVPPPSSATPAKNVVRVGLKRNLNKAFEMFPSLLCVIRPLEWALK 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04922 525 CDD RPA1_DBD_B_like 148 247 - -
Tsu02g04922 525 CDD RPA1_DBD_C 296 407 IPR013955 -
Tsu02g04922 525 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 27 380 - -
Tsu02g04922 525 SUPERFAMILY Nucleic acid-binding proteins 128 254 IPR012340 -
Tsu02g04922 525 SUPERFAMILY Nucleic acid-binding proteins 293 429 IPR012340 -
Tsu02g04922 525 Pfam Replication factor-A C terminal domain 303 387 IPR013955 -
Tsu02g04922 525 Pfam Domain of unknown function DUF223 51 116 IPR003871 -
Tsu02g04922 525 Gene3D - 277 431 IPR012340 -
Tsu02g04922 525 Gene3D - 124 257 IPR012340 -
Tsu02g04922 525 SUPERFAMILY Nucleic acid-binding proteins 14 123 IPR012340 -
Tsu02g04922 525 Gene3D - 13 116 IPR012340 -
Tsu02g04922 525 PANTHER REPLICATION FACTOR A 1, RFA1 27 380 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu02g04922 525 CDD RPA1_DBD_A_like 28 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04922 Tsu-Chr2 58227080 58229592 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04922 19 367 Core DNA Replication Machinery Family AT5G08020 25.000 7.07e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04922 - - mtr:MTR_8g062030 459.529