Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04884 ATGGGAAGATCACCTTGTTGTGATAATAAAAATGGACTCAAAAAAGGTCCATGGACAAATGAAGAAGATCAAATGCTTATCAACTACATTAATACTCATGGACCTGGAAATTGGCGCAACCTTCCTAAAAATGCTGGTCTTCAAAGGTGTGGTAAGAGTTGTCGGCTTCGATGGACGAATTACCTGAGACCTGATATCAAGAGAGGAAGATTTTcctttgaagaagaagagactATCATTCAGCTCCATAGTGTCTTGGGAAACAAGTGGTCAGCAATAGCTGCTAGATTACCCGGAAGAACGgacaatgaaataaaaaattactggAACACACACATAAGGAAGAGACTACTTCGGAATGGAATTGATCCTGTTACTCATACTCCGCGTCTTGATCATCTTTTCGACATCTCCTCCATCAATATTCTCAGATCAGCTTTGTTAGGAGGAAACAATCCATCATTTATGAACCTATTAGGTGGAGCTCAAGCTTTAATGAATCCTGAATTGTTAAAGCTAGCTGCAACAGCAACACtattaaacaacaacaacatgaaTTTGGTTtcacaaaatcaacaacaaatcaATAATGTTGCTAATTGTACTCAGCAACAACAAGTGCAAAGTCAAGTTTACCCTCAAGATCAATTTCAAACACCAACTCAAATCAACAATGTGAATAATGGTTTATTAGGAAACATGAGTTGTTCAAGTTCAGTTGAAAATTCAAATACTTGTTATTTTGGAGAGGATTTGATTTATAAACAATATTCAGAATTGTTTCATTGTCTtaacaatgaaaacaaaaataataccGGGTATGAATCGGTTATATCGTCTACACCTTTATCGacaacaccaacaccaacaccGTTGAATTCGCCATCAACATATGTGAATAGCAACACAGAAGAAGAAAGGGACACATATTGCAGTGACATATTCAAATTTGAGATTCCAGAGGGTACTTTGGACATTAATGATTTCATGTAA 993 0.3223 MGRSPCCDNKNGLKKGPWTNEEDQMLINYINTHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSVLGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRNGIDPVTHTPRLDHLFDISSINILRSALLGGNNPSFMNLLGGAQALMNPELLKLAATATLLNNNNMNLVSQNQQQINNVANCTQQQQVQSQVYPQDQFQTPTQINNVNNGLLGNMSCSSSVENSNTCYFGEDLIYKQYSELFHCLNNENKNNTGYESVISSTPLSTTPTPTPLNSPSTYVNSNTEEERDTYCSDIFKFEIPEGTLDINDFM 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04884 330 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Tsu02g04884 330 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Tsu02g04884 330 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Tsu02g04884 330 SMART sant 67 115 IPR001005 -
Tsu02g04884 330 SMART sant 14 64 IPR001005 -
Tsu02g04884 330 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 324 - -
Tsu02g04884 330 MobiDBLite consensus disorder prediction 275 304 - -
Tsu02g04884 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Tsu02g04884 330 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Tsu02g04884 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Tsu02g04884 330 Gene3D - 14 67 - -
Tsu02g04884 330 Gene3D - 70 117 - -
Tsu02g04884 330 CDD SANT 70 113 IPR001005 -
Tsu02g04884 330 CDD SANT 17 62 IPR001005 -
Tsu02g04884 330 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Tsu02g04884 330 PANTHER TRANSCRIPTION FACTOR MYB41 1 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04884 Tsu-Chr2 57956272 57957833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04884 1 330 MYB Transcription Factor Family AT4G21440 50.139 6.30e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu02g04884 Myb_DNA-binding 5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04884 K09422 - gmx:102668351 400.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04884 02 57956272 57957833 Tsu02g04884 02 57956272 57957833 ECH