Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04877 ATGGAGTTTAACCTTGAAAACCCTCTTGAAAATTTCCATGACCTTCCTAATTCTCAATgtgtttcttctcttttcctcATTGAATCTGACCACATCCCACCACTAAATTACTTTCATAGTCTCAAATCAAACGAGTTTGATGCCTCGGTTAGAAGTGATTTCATCTCTTTGATCTCAGagTTGTCCTGCAACTTTGATCCATTTGTGACTTACCTAGCTATCAACTATTTGGATCGCTTCCTTGCTAACCAAGGGATATTGCAGCCAAAGCCATGGGCCAATAAACTTATTGCAGTAACTTGCTTCTCTCTAGCAGTAAAGATGTTGAAAACAGAGTACTCTGCCACTGATGTTCAGGGTCTTCTGAATCATAGTGATGGTGGTTTCATATTTGAGAcacaaacaataaaaagaatGGAAGCACTTGTCTTAGGAGCATTACATTGGAGAATGCGTTCAATCACTCCTTTCTCTTTCATTCCTTACTTCATCAATTTGTTTAGGCTTGATGATATTACATTAAAAGTTCTTAAAGATCGAGCTTCTGAAATTATTTTGAAGTCACAAAAAGATATTAAGGTTTTGGAATTCAAGCCATCTATAGTTGCTGCTTCATCTCTTCTTTATGCTTCACATGAATTGTTTCCATTTCAATATCCAGGCTTCTTAGGAACAATATATGATTGTTCATATGTAAATAAAGAAAGTGTTGTGCAATGCTATAATGTTATACAAGATATAGCTAAAGAGGAGTACGAATCCATGTTTAATGTGAATTCAAGTTCAGGCACACCAATTAATGTGTTAGACGAAAATTTTCTAAGCTTGGAAAGTGAAAAAACCAATGGAACCAATGTTACTCCTACTAAGAGAAGGAAAATTTAA 885 0.3379 MEFNLENPLENFHDLPNSQCVSSLFLIESDHIPPLNYFHSLKSNEFDASVRSDFISLISELSCNFDPFVTYLAINYLDRFLANQGILQPKPWANKLIAVTCFSLAVKMLKTEYSATDVQGLLNHSDGGFIFETQTIKRMEALVLGALHWRMRSITPFSFIPYFINLFRLDDITLKVLKDRASEIILKSQKDIKVLEFKPSIVAASSLLYASHELFPFQYPGFLGTIYDCSYVNKESVVQCYNVIQDIAKEEYESMFNVNSSSGTPINVLDENFLSLESEKTNGTNVTPTKRRKI 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04877 294 SMART Cyclin_C_2 154 276 IPR004367 -
Tsu02g04877 294 Gene3D - 23 242 - -
Tsu02g04877 294 Gene3D - 34 152 - -
Tsu02g04877 294 CDD CYCLIN 53 144 IPR013763 -
Tsu02g04877 294 PANTHER CYCLINS 5 280 IPR039361 -
Tsu02g04877 294 Pfam Cyclin, N-terminal domain 28 151 IPR006671 -
Tsu02g04877 294 SUPERFAMILY Cyclin-like 19 151 IPR036915 -
Tsu02g04877 294 SUPERFAMILY Cyclin-like 136 249 IPR036915 -
Tsu02g04877 294 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 5 280 - -
Tsu02g04877 294 SMART cyclin_7 53 145 IPR013763 -
Tsu02g04877 294 SMART cyclin_7 158 246 IPR013763 -
Tsu02g04877 294 Pfam Cyclin, C-terminal domain 154 251 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04877 Tsu-Chr2 57901716 57904605 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04877 1 293 Core Cell Cycle Gene Families AT4G03270 46.104 5.95e-76 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04877 K18812 - gmx:100799951 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04877 02 57901716 57904605 Tsu02g04877 02 57901716 57904605 ECH