Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04876 ATGGTGAGAACTTCTTTTTGTGACAAAAATGGATTGAGAAAAGGCACGTGGACAATTGAGGAAGACAAAAAATTGATTGCTTATGTTACTAGGTATGGCTGCTGGAATTGGCGCCAACTACCTAAATTTGCAGGTCTTCAAAGGTGTGGGAAGAGTTGTAGATTAAGGTGGTTGAACTATCTAAAGCCAGATATCAAAAGAGGGAACTTTAGTCAACAAGAAGAAGAGACTATCATTAAACTTCACCAAAAATTGGGTAATAGATGGGTCTTGATTGCTGCAAATTTACCGGGAAGAACAGATAACGAGATAAAGAATTACTGGcacactattttaaaaaaacgcGTTATGAAAAATAACACGTCAGACGCTAAATGTGGAACAAGAAAAGCCAAATATTCAAAGTCAAATAATCACCCTACAATGGAAGAAGCCAATAAACTTGATGGTGTGTTAGAGAACAACAGTGATGCCAATATTTCAAATCCACTTTCTTCACAACCATCTTCAAGTGAATTTTCTTGCATAACAATGGATACTGCAGCTACCACAATATCATATGAAAATTCTCTTTTTGATGACAATGTCATTCCTTTTATGGATGTATACATGGAAGCTGTGAGTGAAAATTTCTGGACAGAGCCATATATGATAGAGAGTACATATGTCCATCCAAGTGAAGAAGTACTTCCTGCAGGGTGTGAATATGAATTCTTTAGTCCTATGTACGATATAGAACTTTGGAGCAATGTTGAATAA 759 0.3531 MVRTSFCDKNGLRKGTWTIEEDKKLIAYVTRYGCWNWRQLPKFAGLQRCGKSCRLRWLNYLKPDIKRGNFSQQEEETIIKLHQKLGNRWVLIAANLPGRTDNEIKNYWHTILKKRVMKNNTSDAKCGTRKAKYSKSNNHPTMEEANKLDGVLENNSDANISNPLSSQPSSSEFSCITMDTAATTISYENSLFDDNVIPFMDVYMEAVSENFWTEPYMIESTYVHPSEEVLPAGCEYEFFSPMYDIELWSNVE 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04876 252 CDD SANT 69 112 IPR001005 -
Tsu02g04876 252 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu02g04876 252 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 222 - -
Tsu02g04876 252 CDD SANT 16 61 IPR001005 -
Tsu02g04876 252 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 222 - -
Tsu02g04876 252 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu02g04876 252 Gene3D - 14 66 - -
Tsu02g04876 252 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu02g04876 252 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu02g04876 252 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tsu02g04876 252 SMART sant 13 63 IPR001005 -
Tsu02g04876 252 SMART sant 66 114 IPR001005 -
Tsu02g04876 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu02g04876 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu02g04876 252 Gene3D - 68 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04876 Tsu-Chr2 57891927 57893858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04876 1 125 MYB Transcription Factor Family AT2G31180 66.929 4.56e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu02g04876 Myb_DNA-binding 2.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04876 K09422 - mtr:MTR_2g089420 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04876 02 57891927 57893858 Tsu02g04876 02 57891927 57893858 ECH
Tsu02g04876 02 57891927 57893858 Tsu06g01146 06 10475092 10493647 PCT
Tsu06g01148 06 10533493 10534299 Tsu02g04876 02 57891927 57893858 PCT