Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04872 ATGGACCGGAGCTTAGAAGAGATAATTATCTACAACTTTTCATTTGTGTTGAACAAGAAGGAAAGCTATTTCACCTATTCCTCGAATTATTCTTCCATTATATCGCGGTTTGTGATGGATATCTCGGGGGAGATTCAGCTATTATTATGGTTTGAAGATGGGTGTATGAGAAAAACAAGGTTGCAATGCGAGGGTTCAAATCCCTCTAATCGCAATAAGGATACCTTCCTTGCAATCCCCTACTTGAGATTACCTAAACACGGACAATTTGTGGGGCAAGGTAATGTATCGGAATGTGAATCAACCTGCTGGAAATACTGCTCTTGCACTGCTTATGCATATGATGCTAATGGATGTTCAATTTGGTTTGGAGACCTCATGAATCTGcaacaattgtattttgatgataataatagaGAAACCTTGTATCTCAAACTTGCGGCACCAGAACTTCGCAATGCTAGTAAAAACAGTAATCGGGGGAGGGTGATTATTAGTATTGTGGGTGCAGTTGTTGGCATAGGAGTACTCTTGGCTCTTCTATTGTTTTTCATGCTTAGGCAAAGAAAAAGAGTGACTATAATGGGAAACCTCTTGGAGGGTTTTATGGTGGAAATTGGGTACAAGGATTTACAAAACGCGACTAAGAATTTCTCTGAAAAATTGGGAGGAGGAGTGAAGAAATTGGAAAGTGTTAGCCAAGGAGAGAAGAAGCAGTTCAGAGCAGAAGTGAGTACAACAGGGATAGTGCAACATGTTAATCTCGTTCGACTCCGTGGATTCTGCTCCGAAGGATTCGGAATTGCAAGGGGATTAACTTACCTCCATGAAAAGTGTCGAGATAGTATCATACACTGTGATGTAAAGCCTGAAAACATTCTCCTAGACTCCGATTTTTGTCCAAAAGTTGCAGATTTTGGCCTAGCTAAGCTAATTGGACGAGATTTCAGCAGGGTCTTAACAACCGTGAGAGGAACAATAGGCTATCTTGCTCCGGAGTGGATTCCCGGGGTGGCTATTACAGCCAAAGCTGATGTTTACAGCTATGGAAAGATGCTTTTCGAGGTTGTATCAGGTAGAAGGAACTCTGGTCCATCAGGAGATGGTCAAATTTCGTATTTTCCTACATTAGCATCAAAAGCAGTTATTGAAGGTGGTAGTGTCATCACCCTTTTGGACCCTAGATTGGAGGGAAATGCTGACATTGAGGAGGTTGCGCAAATAATAAAAGTCGCATCTTGGTGTGTACAAGACAATGAAACTGAAAGGCCAACAATGGGTCAGGTAGTCCAAATTCTTGAGGGGATTTTGGAGGTGAATTTGCCTCCAATTCCAAGATCACTTCAAATGTTTGTTGACAACCATGATAACGTGGTTCTCTACACTGACTCTAGCTCAACACAAAGTTTACAGGTAAAGAGTAATATCTCAACAATCTCTCCGGCGAAAAGTAACATCTCATCAGCTAGCTCTAAGTCCTCAACAGAAAATTAG 1494 0.4083 MDRSLEEIIIYNFSFVLNKKESYFTYSSNYSSIISRFVMDISGEIQLLLWFEDGCMRKTRLQCEGSNPSNRNKDTFLAIPYLRLPKHGQFVGQGNVSECESTCWKYCSCTAYAYDANGCSIWFGDLMNLQQLYFDDNNRETLYLKLAAPELRNASKNSNRGRVIISIVGAVVGIGVLLALLLFFMLRQRKRVTIMGNLLEGFMVEIGYKDLQNATKNFSEKLGGGVKKLESVSQGEKKQFRAEVSTTGIVQHVNLVRLRGFCSEGFGIARGLTYLHEKCRDSIIHCDVKPENILLDSDFCPKVADFGLAKLIGRDFSRVLTTVRGTIGYLAPEWIPGVAITAKADVYSYGKMLFEVVSGRRNSGPSGDGQISYFPTLASKAVIEGGSVITLLDPRLEGNADIEEVAQIIKVASWCVQDNETERPTMGQVVQILEGILEVNLPPIPRSLQMFVDNHDNVVLYTDSSSTQSLQVKSNISTISPAKSNISSASSKSSTEN 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04872 497 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 53 265 - -
Tsu02g04872 497 CDD PAN_AP_plant 59 147 - -
Tsu02g04872 497 ProSitePatterns Serine/Threonine protein kinases active-site signature. 283 295 IPR008271 GO:0004672|GO:0006468
Tsu02g04872 497 SUPERFAMILY Protein kinase-like (PK-like) 226 464 IPR011009 -
Tsu02g04872 497 SMART serkin_6 216 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04872 497 Pfam Protein kinase domain 268 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04872 497 SMART ntp_6 71 146 IPR003609 -
Tsu02g04872 497 ProSiteProfiles Protein kinase domain profile. 85 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04872 497 ProSiteProfiles PAN/Apple domain profile. 63 147 IPR003609 -
Tsu02g04872 497 Gene3D Transferase(Phosphotransferase) domain 1 270 458 - -
Tsu02g04872 497 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 7 53 - -
Tsu02g04872 497 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 266 463 - -
Tsu02g04872 497 Pfam PAN-like domain 71 129 IPR003609 -
Tsu02g04872 497 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 53 265 - -
Tsu02g04872 497 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 7 53 - -
Tsu02g04872 497 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 266 463 - -
Tsu02g04872 497 Gene3D Phosphorylase Kinase; domain 1 217 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04872 Tsu-Chr2 57852293 57854088 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04872 170 443 Receptor kinase-like Gene Family AT5G20050 33.884 1.16e-51 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Tsu02g04872 Pkinase 1.4e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04872 - - gmx:100810583 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04872 02 57852293 57854088 Tsu02g04872 02 57852293 57854088 ECH