Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04871 ATGTTCAACATGATGAAACCATGGTTCTTCTGTGTTTCTCTTCTagtgttctttttctctttaaacTTCTATCCTTCCCTTGCAGCTATAACTATAATCTCTTCAAACCAATCTCTCTCTGGTGATCAAACTCTTATCTCTAAAGGAGGAATCTTTGAATTAGGTTTTTTCAAACCAGGTAATTCTTCTAACTACTATATAGGCATATGGTACAAAAAGATTAGTCAACAAACAATTGTTTGGGTAGCCAATAGAGACAATCCTGTCTCTGACAAAAACACTGCCACATTAACAATTTCAGCTGGTAATTTAGTTCTATTAAATGAGTCTTCAAAACAAGTTTGGTCCACAAACATGAGTTTTCCTAAGTCAGTTTCTGTTGTATCTATGCTTCTAGATACTGGAAATCTTGTTTTGAGAAATAGGCCTAATGATGATGCATCAAATCCTCTATGGCAAAGTATTGATCATCCAACAGATACATGGCTTCCTGGTGGAAAAATTAAGTTGGACACTAAAACAAAGAAGCCTCAATATCTTACCTCATGGAAGAATAAGAAAGATCCTGCAACAGGTCTTTTCTCTTTGGAATTAGACCCGAAAGGAACAACATCATATCTTATTCTTTGGAATAAGTCTGAACAGTATTGGACAAGTGGACCTTGGAATGGACATATTTTCAGTTTGGTTCCTGAGATGAGGGCAAATTATATCTACAATTTTTCGTTTGTGTCGAACGAGAATGAAAGTTATTTCACTTATTCCTTGTATAACCCTTCCATTATAACGCGGTTTGTGATGGATATCTCAGGGCAGATTAAGCAATTATCATGGTTGGAAGGTATCAATGAGTGGAACCTGTTTTGGTCGCAACCAAGAACACAGTGTGTGGTTTATGCTTTTTGTGGTGCTTTTGGGAGCTGTACTGAGAACTCGAAGCCGTATTGTAATTGTTTGAGTGGTTTTGAGCCAAAGTCGCAATCTGATTGGGATCTGGAGGATCACTCAGGTGGGTGTAAGAGGAAAACAACATTGCAATGCGAGAGTTCTGATCACTCTAACGGAGTAAAGGACAGGTTCCGTGCAATCCCCAACATGGCATTGCCTAAACATGCAAAATCTGTGAGATCAGGGAATGCAGTAGAATGTGAATCAATATGCCTGAAAAACTGTTCTTGTTCTGCTTATTCATACGACGGTAACGAGTGTTCAATTTGGATTGAAGAACTACTGAATCTGCAACAATTTCCTTCAGATGACAGTAGCGGAAAAACATTGTATCTAAAACTTGCAGCATCAGAATTTAGTGATGCTAAAAACAATAATGGGGTGATTATCGGTGTTGTAGCAGGTGCAGTTGTTGGGATAGGGATTCTCTTGGCTATTCTTCTGTTTGTCATGCTTAGGCGAAAGCGAACAGTTGGAACAGGTAAGCCCGTGGAGGGTTCATTGGTGGCATTTGGGTACAGAGATATGCAAAATGCGACCAAGAATTTTTCTGAGAAGTTGGGAGGAGGAGGATTTGGTTCAGTTTTCAAAGGAACATTGGCTGATTCGAGTGTCGTGGCAGTGAAGAAGTTGGAAAGTGTTAGCCAAGGAGAGAAGCAGTTCAGAACAGAAGTGAGTACCATAGGGACAGTGCAACATGTTAATCTTGTTCGGCTCCGAGGATTCTGTTCAGAAGGTACTAAAAGGATGCTGGTTTATGATTACATGCAAAACGGTTCCTTGGATTTCCATTTGTTCATGAAAAAGGATTCTTCTAATGTGTTGGACTGGAAAATGAGATACCAAATTGCTCTTGGAATTGCAAGGGGATTAAATTACCTCCACGAGAAGTGCCGAGACTGTATCATACACTGCGATGTAAAGCCTGAAAACATTCTCCTAGACTCCGATTTTGTTCCGAAAGTTGCAGACTTTGGCCTAGCTAAGCTAGTCGGACGAGATTTCAGCAGGGTCCTAACAACCATGAGAGGAACAAGAGGCTATCTTGCTCCAGAGTGGATTTCTGGGGTGGCTATTACAGCCAAAGCCGATGTTTACAGCTACGGAATGATGCTTTTCGAGGTTGTATCAGGTAGGCGGAACTCTGATCCATCAGAAGATGGTCAAGGTACTTTTTTTCCTACCTTAGCTGCAAAAGTAGTTATTGAAGGTGGCAGTGCGATCACCCTTTTGGACCCTAGATTGGATGGAAATGGCGACGTTGAAGAAGTTGCGCGAATAATAAAAGTCGCTTCTTGGTGTGTCCAAGACAATGAAACTGAAAGGCCAACAATGGGTCAGGTAGTTCAAATTCTCGAGGGGATTTTGGAGGTGAATTTGCCTCCAATTCCAAGATCACTTCAAATGTTTGTTGACAACCATGAAAACATGATTTTCTATACTGACTCTAGCTCAACACAAAGTTCACATGTAAAGAGTAACATCTCAACAATTTCTCAGGCCAAAAGTAACATCTCATCAGATAGCTCTAAGTCCTCAGCAGAAAATTAG 2499 0.4006 MFNMMKPWFFCVSLLVFFFSLNFYPSLAAITIISSNQSLSGDQTLISKGGIFELGFFKPGNSSNYYIGIWYKKISQQTIVWVANRDNPVSDKNTATLTISAGNLVLLNESSKQVWSTNMSFPKSVSVVSMLLDTGNLVLRNRPNDDASNPLWQSIDHPTDTWLPGGKIKLDTKTKKPQYLTSWKNKKDPATGLFSLELDPKGTTSYLILWNKSEQYWTSGPWNGHIFSLVPEMRANYIYNFSFVSNENESYFTYSLYNPSIITRFVMDISGQIKQLSWLEGINEWNLFWSQPRTQCVVYAFCGAFGSCTENSKPYCNCLSGFEPKSQSDWDLEDHSGGCKRKTTLQCESSDHSNGVKDRFRAIPNMALPKHAKSVRSGNAVECESICLKNCSCSAYSYDGNECSIWIEELLNLQQFPSDDSSGKTLYLKLAASEFSDAKNNNGVIIGVVAGAVVGIGILLAILLFVMLRRKRTVGTGKPVEGSLVAFGYRDMQNATKNFSEKLGGGGFGSVFKGTLADSSVVAVKKLESVSQGEKQFRTEVSTIGTVQHVNLVRLRGFCSEGTKRMLVYDYMQNGSLDFHLFMKKDSSNVLDWKMRYQIALGIARGLNYLHEKCRDCIIHCDVKPENILLDSDFVPKVADFGLAKLVGRDFSRVLTTMRGTRGYLAPEWISGVAITAKADVYSYGMMLFEVVSGRRNSDPSEDGQGTFFPTLAAKVVIEGGSAITLLDPRLDGNGDVEEVARIIKVASWCVQDNETERPTMGQVVQILEGILEVNLPPIPRSLQMFVDNHENMIFYTDSSSTQSSHVKSNISTISQAKSNISSDSSKSSAEN 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04871 832 CDD B_lectin 36 158 IPR001480 -
Tsu02g04871 832 Gene3D - 28 155 IPR036426 -
Tsu02g04871 832 ProSiteProfiles PAN/Apple domain profile. 347 431 IPR003609 -
Tsu02g04871 832 ProSitePatterns Protein kinases ATP-binding region signature. 503 526 IPR017441 GO:0005524
Tsu02g04871 832 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
Tsu02g04871 832 SMART blect_4 36 158 IPR001480 -
Tsu02g04871 832 Pfam PAN-like domain 356 412 IPR003609 -
Tsu02g04871 832 CDD STKc_IRAK 503 771 - -
Tsu02g04871 832 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 223 IPR036426 -
Tsu02g04871 832 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 8 798 - -
Tsu02g04871 832 SMART serkin_6 497 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04871 832 CDD PAN_AP_plant 343 431 - -
Tsu02g04871 832 PIRSF SRK 1 822 IPR024171 GO:0004674
Tsu02g04871 832 Gene3D Transferase(Phosphotransferase) domain 1 572 776 - -
Tsu02g04871 832 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 8 798 - -
Tsu02g04871 832 ProSiteProfiles Protein kinase domain profile. 497 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04871 832 ProSiteProfiles Bulb-type lectin domain profile. 30 152 IPR001480 -
Tsu02g04871 832 MobiDBLite consensus disorder prediction 803 832 - -
Tsu02g04871 832 SMART ntp_6 355 430 IPR003609 -
Tsu02g04871 832 SUPERFAMILY Protein kinase-like (PK-like) 480 769 IPR011009 -
Tsu02g04871 832 Pfam D-mannose binding lectin 78 184 IPR001480 -
Tsu02g04871 832 Gene3D Phosphorylase Kinase; domain 1 465 571 - -
Tsu02g04871 832 Pfam S-locus glycoprotein domain 217 326 IPR000858 GO:0048544
Tsu02g04871 832 Pfam Protein kinase domain 500 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04871 Tsu-Chr2 57848895 57851582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04871 448 778 Receptor kinase-like Gene Family AT5G20050 41.803 3.29e-79 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Tsu02g04871 Pkinase 4.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04871 - - gmx:100782119 1220.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04871 02 57848895 57851582 Tsu06g01161 06 10662034 10664686 PCT