Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04867 atgaaaaatattgttctaTTTTCCCTTAATTTTTTGCTACTATGCTTTCAAATATGTTCAGCTAGAAATACTTTGAATTTTGGCAACAATATATCTCAGCAAGAGAACCTTGTTtcaattggaaaaaaatttcaacttggTTTTTTCTCCTTACCAATTGAAAGTAGTAGCAAAAAATACTTTGGAATATGCTATCACAATTTGCCACAACAAACAGTGGTATGGATAGCCAACAGAAACAAGCCTATTGTAGATTCCGGCGCAGTTTTTAAAATTGCGGAGGATGGAAATTTGGTAGTAGCAGATGAATCACAAAGTTATTGGTCCACAAATTTAGAAGAGTCTGCATCAAGAAATAGAGTAGTGAAGCTCTTGGATTCCGGAAACCTAGTactgatggatgatgatgatcgTCGTTACTTGTGGCAAAGTTTCCAACATCCAACAGATACATTTCTTCCTGGTATGAAAATGGACATAAATTTAACATTGAGTTCTTGGAAAAATGAGAATGATCCAGAAACCGGAAGTTTTGCCTTTGAAAAGACGAAAATAGGGGATCCTCGAAGTTATAGAATATACAACCATTCACAGCTTTACTCGGAATTTGATGGACAAAATTTCAATATGATGTTCCAATTTGTTCTCGACTTATTGGAGAATACAACCTCTCATTCGTCGTACAATAAGTTTTTGAACAGAACCTTCCAACAAGAACGTTTTAATTACGATAAATCAAGGTTGGTGATGAATTCTACTGGGGAGATACAATTTTGGAGGTGGGAGGATAACCTTCAATGGAATAAGATGTGGTGGCGGCCATCGGATATATGTGACACACATAACCATTGTGGTAACTTTAGCAGCTGCAGCAAAGATAATTGGATTCCATGTAAGTGTTTGCCAGGATTCCGTAGTTTGTCGGATAATGGTCATCGTTATCAGCTTGGAGAACGGTTCCAAGGGTGTGTTAGAAAATCGCAAACACCGTGTCTCCCAAAGGTCATGGCCACTGCCAACAATGACTTGATATTCATCAACTTAACAAAGATAAAAGTGGGAAATCCGGACATAGGATTGTCGACAGATTCAGAAGCAAATTGTCAATCTATATGCCTTAACATGTGTTCCCGGTGCAATGCTTATTCGTATAGTGCTAAATATAGTGATCGTAGCATCTTTTCATGTTCGATATGGACACAACAATTACCTACACTTCAAGAGGATCAAGATGATGGCCGCAATCTTTTGATCCTAGTCAAAAGATCAGATATAgAATCAACTGCAAAATCGTGCGAACCTTGTGGCACATATATAATTCCTTATCCTCTAAGCACCGGGCCAAAATGCGGAGACCCTATGTACAACAAGTTCAATTGTAACTTATTGACAGGCCAACTAAGTTTCATGTTGTCAGATGGAAAATCATATCGAGTTACCGTGATTGATGAAGGTAATAGAATGTTTTATATCCAAACGAATGATACAAATCGCTGTGATGATTCCAGTTCCAGTAGTTATCAAACTAGTTCACCATTTAGTGTGACTAATTGGTGTTCTGAGGAAGATGAAATACAGCTCAATTGGGCGCCAGCACCCGAACCACATTGCGATAAATATGTTGGATGCAAAAATTGGCCCCATTCGACATGCATTGCAAAAAGTGGAGGAGAAAATAGGTGCTATTGTGATTCAAAATATTTGTGGAACGCCTCAAGTTTAACTTGTACCCGAGAACCATCGAGAAACCATTCAACCTATCGAAAGCGATTGATTCTAGCAGTAATTTGTATAGTCATCATTATCTTAACATGTACGGGGGTGTTTGCTTATGTACGCAGAAAGAAAATAGGCCACAAGCTTGATAAGGTGAGCATTCAAATTCAGGAAAGTTTGTACAACAGTGAAAAACATGTGAAAGGTTTGATTGGCTTAGGAAGTTTAGAAGAAAATGATGGTGAAAGCATTGAAGTACCTTATTATACTTTTAGAAGCATTCTATTAGCTACAAATAATTTTTCAGATTCAAACAAGCTTGGACAAGGAGGTTATGGCCCTGTCTATAAGGGAAGATTTCCTGGAGGTCAAGATATTGCTATAAAGCGGCTTTCGAGTGTTTCAACTCAAGGCTTACACgaatttaaaaatgaagttGTTTTGATTGCCAAACTTCAACATCGAAATCTTGTTAGGCTTAGGGGTTATTGCGTTAAAGGAAACGAAAAAATCCTACTATATGAATACATGTCGAACAAGAGCTTGGACACGTTTATATTTGATCGAACACGAACTGTACTTTTGGATTGGAAACTGCGGTTTGACATTATTATAGGCATTGCCCGAGGGATGCTTTATCTCCATCAAGACTCAAGATTGAGAGTGATTCATAGAGACCTTAAAACAAGCAACATTCTTTTAGACGAGGAGATGATTCCAAAGATATCAGACTTTGGTCTAGCCAAAATATTTGGCGGAAAAGAGACTGAAGCAAGCACACAAAGAGTAATGGGAACCTACGGATATATGGCTCCAGAGTATGCCTTGGATGgattcttttcaattaaatcaGATGTTTTTAGCTTTGGTATAGTCCTACTAGAGATTCTCAGTGGTAAAAAGAACACGGGTTTCTTTCGGTCTCAAGAAATTTCTAGCCTTTTGGGTCATGCATGGAAATTATGGACAGAGAATAAGTTGCTGGATTTAATGGATTCTGCTATCAGTGAAAGTTGCAATAAGAATCAATTCATTAAGTGTGCACATATTGGGCTCTTATGTGTACAAGATGAACCAGGTGATCGACCTACCATGTCAAATATTTTGACAATGCTTGACAGTGAAGCTTCAATAATCCCAATTCCAACACAACCAACCTTTTTTATGACCAAACACCAATCATCTAGTTCTTCTTCTAGCAAACTAGAAATAAATATGCAATTTGATACTAGTTATCAAGAAGGTCGCTAG 2967 0.366 MKNIVLFSLNFLLLCFQICSARNTLNFGNNISQQENLVSIGKKFQLGFFSLPIESSSKKYFGICYHNLPQQTVVWIANRNKPIVDSGAVFKIAEDGNLVVADESQSYWSTNLEESASRNRVVKLLDSGNLVLMDDDDRRYLWQSFQHPTDTFLPGMKMDINLTLSSWKNENDPETGSFAFEKTKIGDPRSYRIYNHSQLYSEFDGQNFNMMFQFVLDLLENTTSHSSYNKFLNRTFQQERFNYDKSRLVMNSTGEIQFWRWEDNLQWNKMWWRPSDICDTHNHCGNFSSCSKDNWIPCKCLPGFRSLSDNGHRYQLGERFQGCVRKSQTPCLPKVMATANNDLIFINLTKIKVGNPDIGLSTDSEANCQSICLNMCSRCNAYSYSAKYSDRSIFSCSIWTQQLPTLQEDQDDGRNLLILVKRSDIESTAKSCEPCGTYIIPYPLSTGPKCGDPMYNKFNCNLLTGQLSFMLSDGKSYRVTVIDEGNRMFYIQTNDTNRCDDSSSSSYQTSSPFSVTNWCSEEDEIQLNWAPAPEPHCDKYVGCKNWPHSTCIAKSGGENRCYCDSKYLWNASSLTCTREPSRNHSTYRKRLILAVICIVIIILTCTGVFAYVRRKKIGHKLDKVSIQIQESLYNSEKHVKGLIGLGSLEENDGESIEVPYYTFRSILLATNNFSDSNKLGQGGYGPVYKGRFPGGQDIAIKRLSSVSTQGLHEFKNEVVLIAKLQHRNLVRLRGYCVKGNEKILLYEYMSNKSLDTFIFDRTRTVLLDWKLRFDIIIGIARGMLYLHQDSRLRVIHRDLKTSNILLDEEMIPKISDFGLAKIFGGKETEASTQRVMGTYGYMAPEYALDGFFSIKSDVFSFGIVLLEILSGKKNTGFFRSQEISSLLGHAWKLWTENKLLDLMDSAISESCNKNQFIKCAHIGLLCVQDEPGDRPTMSNILTMLDSEASIIPIPTQPTFFMTKHQSSSSSSSKLEINMQFDTSYQEGR 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04867 988 CDD STKc_IRAK 679 945 - -
Tsu02g04867 988 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 15 986 - -
Tsu02g04867 988 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 173 IPR036426 -
Tsu02g04867 988 Gene3D Transferase(Phosphotransferase) domain 1 749 951 - -
Tsu02g04867 988 Pfam S-locus glycoprotein domain 229 306 IPR000858 GO:0048544
Tsu02g04867 988 SMART serkin_6 673 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04867 988 Gene3D - 17 146 IPR036426 -
Tsu02g04867 988 ProSitePatterns Serine/Threonine protein kinases active-site signature. 794 806 IPR008271 GO:0004672|GO:0006468
Tsu02g04867 988 SMART blect_4 28 148 IPR001480 -
Tsu02g04867 988 ProSiteProfiles Protein kinase domain profile. 673 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04867 988 CDD B_lectin 29 148 IPR001480 -
Tsu02g04867 988 Gene3D Phosphorylase Kinase; domain 1 647 748 - -
Tsu02g04867 988 Pfam D-mannose binding lectin 72 163 IPR001480 -
Tsu02g04867 988 SUPERFAMILY Protein kinase-like (PK-like) 655 974 IPR011009 -
Tsu02g04867 988 Pfam Protein tyrosine and serine/threonine kinase 676 943 IPR001245 GO:0004672|GO:0006468
Tsu02g04867 988 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 15 986 - -
Tsu02g04867 988 ProSiteProfiles Bulb-type lectin domain profile. 22 145 IPR001480 -
Tsu02g04867 988 ProSiteProfiles PAN/Apple domain profile. 331 423 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04867 Tsu-Chr2 57806528 57810492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04867 663 961 Receptor kinase-like Gene Family AT4G23140 57.049 6.68e-122 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu02g04867 PK_Tyr_Ser-Thr 3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04867 - - gmx:100807185 1216.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04867 02 57806528 57810492 Tsu02g04867 02 57806528 57810492 ECH
Tsu02g04867 02 57806528 57810492 Tsu06g01166 06 10708366 10713830 PCT