Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04861 ATGTTGGCGAAAACTTGTGAAAAAGGGGAAGGATCTAAGTCCCTGGGTAAGATACTGGCAAGATGGAAAGAATACAATGCTCAACTTGAAGCCTGCAATGACACAGACAAGCCTGTTCGGAAAGTTGCAGCTAAGGGATCGAAGAAAGGGTGTATGAAAGGTAAAGGAGGGCCTGAAAACTCGCGGTGTAACTATAGAGGTGTTAGGCAGAGGACTTGGGGGAAATGGGTTGCTGAAATCCGTGAGCCTAACCGAGGGAGTAGGCTATGGCTAGGTACTTTTCCATCTGCCATCAATGCTGCTTTTGCTTATGATGAAGCAGCTAGAGCAATGTATGGTTCTTGTGCTCGTCTCAACTTTCCTAATGTCTCGGTTCCTAGATTCTCTGAGGAATCTTCTAATGATTCTCCGGATGCAAATCACTCTGGTTCCTCAATGACAGTATTGACAAATACTGAATCCATGATAATACCAAATAACTCGGGGATAGGAATTGATGACGAGACTGATATGGAAGCTGTTAACTTATCCTTAAGTGTGAAACAGGAGAATGAGGAAGGCGAATCAGGATAA 573 0.4398 MLAKTCEKGEGSKSLGKILARWKEYNAQLEACNDTDKPVRKVAAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPSAINAAFAYDEAARAMYGSCARLNFPNVSVPRFSEESSNDSPDANHSGSSMTVLTNTESMIIPNNSGIGIDDETDMEAVNLSLSVKQENEEGESG 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04861 190 MobiDBLite consensus disorder prediction 127 146 - -
Tsu02g04861 190 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Tsu02g04861 190 PRINTS Ethylene responsive element binding protein signature 103 123 IPR001471 GO:0003700|GO:0006355
Tsu02g04861 190 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 155 - -
Tsu02g04861 190 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
Tsu02g04861 190 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Tsu02g04861 190 CDD AP2 63 123 IPR001471 GO:0003700|GO:0006355
Tsu02g04861 190 Gene3D AP2/ERF domain 64 123 IPR036955 GO:0003700|GO:0006355
Tsu02g04861 190 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Tsu02g04861 190 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Tsu02g04861 190 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04861 Tsu-Chr2 57782723 57785100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04861 8 125 AP2-EREBP Transcription Factor Family AT2G40350 59.836 3.14e-49 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu02g04861 AP2 5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04861 - K09286 cam:101488673 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04861 02 57782723 57785100 Tsu06g01176 06 10800019 10800606 PCT