Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04856 ATGCACGTCCACATGAAAGCTGAGTTAAAAGCACAATCAATTTCCTTTCAAAACCAAACACTCTTCAACACACACCAAAACAATCCTCCACTTCCTGAACCAGAAGCACTTAAAGGTTGTCTAGGAAGCTTAGATGGAGCATGTATTGAAAAACTTTTACTTCATTGTGCAAGTGCTTTAGAAAGCAATGACATAACCTTAGCTCAACAAGTTATGTGGGTCTTAAACAACGTTGCTTCACCCTTAGGTGACACAAATCAAAGACTCACTTCATGGTTTCTTAGAGCATTAATCTCTAGAGCTTCAAGAATTTGTCCTGTTTCAATGAATTTCAAAGGAAGTAACATAATTCAAAGAAGATTGATGTCGGTTACCGAACTCGCCGGGTATGTTGATTTAATTCCTTGGCATAGGTTTGGATTTTGTGCTTcaaataatgaaattttcaaagcAATTAAAGGATTCAAAAGGGTacatattttagattttagtatAACACCTTGTATGCAATGGCCTACTTTTATAGATTCTTTGGCTAAATTACAAGAAGGTCCTCCTTCACTTAGAATCACAGTTCCATTTTTTAGGCCAATGGTTCCTCCTTTGGTCAATATCTCAATACATGAAGTTGGTCAACGTTTAGGTAATTTTGCAAAGTTTAAGGATGTCCCTTTTGAATTTAATGTTATCGGAGATAATGTTTCATTGACTTCTGAAGAATTGAGTAATATTGAATCAACAAGTTTTCATTTTGAATCAATGTTAAGTCTCTTGAATCCTAACATGTTAAATCTTAGGGAAGATGAAGCTTTGGTTATAAATTGTCAAAATTGGTTACGATATTTGTCCGATGATAGAAAAGGTCAAAATATTTCGATTCGTGACGCTTTTATAAATTTAGTTAAAGGACTTAACCCTCAAATTGTTCTATTGGTTGATGAGGATTGTGATCTTAGTTCATCAAGTTTAACATCAAGAATTACAGCTTCTTTTAACCATTTATGGATACCCTTTGATGCATTGGACACTTTTTTACCTAAAGATAGTTGTCAAAGGACAGAATTTGAATCTGACATAGGACAAAAAATTGAGAACATTATAAGCTATGAAGGGAATCAAAGAATTGAGAGATTGGAATCAGGGATGCAAATGTCACAAAGAATGAAAAATGCTGGTTACTTTAGTGTTCCATTTTGTGATGAAACTATTTTGGAAGTTAAGGGTTTGCTTGATGAACATGCTAGTGGATGGggaatgaaaaaagaagaaagcatGTTGGTTCTTACATGGAAAGGAAATAGTTGCGTGTACGCGACCGCTTGGGTCCCTAATGAAATTAGGGATCATATCTTTTTGGATGCACGCGTGTCCTAA 1374 0.337 MHVHMKAELKAQSISFQNQTLFNTHQNNPPLPEPEALKGCLGSLDGACIEKLLLHCASALESNDITLAQQVMWVLNNVASPLGDTNQRLTSWFLRALISRASRICPVSMNFKGSNIIQRRLMSVTELAGYVDLIPWHRFGFCASNNEIFKAIKGFKRVHILDFSITPCMQWPTFIDSLAKLQEGPPSLRITVPFFRPMVPPLVNISIHEVGQRLGNFAKFKDVPFEFNVIGDNVSLTSEELSNIESTSFHFESMLSLLNPNMLNLREDEALVINCQNWLRYLSDDRKGQNISIRDAFINLVKGLNPQIVLLVDEDCDLSSSSLTSRITASFNHLWIPFDALDTFLPKDSCQRTEFESDIGQKIENIISYEGNQRIERLESGMQMSQRMKNAGYFSVPFCDETILEVKGLLDEHASGWGMKKEESMLVLTWKGNSCVYATAWVPNEIRDHIFLDARVS 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04856 457 Pfam GRAS domain family 50 441 IPR005202 -
Tsu02g04856 457 ProSiteProfiles GRAS family profile. 40 442 IPR005202 -
Tsu02g04856 457 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 6 443 IPR005202 -
Tsu02g04856 457 PANTHER OS05G0500600 PROTEIN 6 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04856 Tsu-Chr2 57690031 57691888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04856 31 443 GRAS Transcription Factor Family AT3G49950 43.735 3.47e-116 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu02g04856 GRAS 5.6e-84 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04856 - - gmx:100805056 725.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04856 02 57690031 57691888 Tsu02g04856 02 57690031 57691888 ECH