Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04854 ATGGACCCAAATTTCCACCCTATGTTTTCCGGTGACACTTCTGATCCATTGTTTTCCAACTTCAGCCTTCAATCACTTCTCACTTACAACAATAACCCTTCTTTCTTCTCCCATGACAACACTCCTTCACTCCCTAACCTCCCTGAAACCATCACTCACCAAACTCATCCAAACCTTAACAACAATGAAAATCTCTTCCTCGTTCCAAAACCAGAACACCCTTTAAACCATCTTGATCTTCCTCCATTAGAACAATTTCTTCCTATTCAACAACCCTTCAACTTCTTCCCTCAATAtcttccaccaccaccaccaccacccttTGAATCCTTCAACCGTCTCCCTCAACTCATTTCTCATCATGAACAACCCTCTACCAGAAAACGTCCCCACCACTCTGAAACCACCACCACATCACTACCACCATCGTTTCGTGGAAAATCTCCTTCATCATTGATTCCCCAAAGCCAGTTAGCAAGACAGAGAAGACAAAAACTAAGCGAAAAAACTCGTTGCTTGCAGAAACTAATGCCATGGGATAAGAAAATGGATCAAGCTACACTTTTAGAAGAAGCTTTCAAATATGTCAAGTTTTTGAAAGCACAACACTCTGTTCTTCAATCAATGCCACCATACTCAACCACAAACTACGGCGGCGGAAACACCGGAACTGGTGCTGGTGGTGTTTTTGGTGACTTGGAAATGCTTAACAGAAACCAAGCTTTGCAAGTTCTTGTGAACTCACCAGTTGCACAAACAAAGCTATGTTCACAAGGTTACTGTGTTTTCTCCATGGAACAATTTTCTCTGCTCAGAAAGTTATCAGAAAGAAGACAATTGCAACAGCAACAGCAGAagaattttttgtctttttctgaTCATGGTTCTTCCAAAACTTTCTTTCACTGA 909 0.3927 MDPNFHPMFSGDTSDPLFSNFSLQSLLTYNNNPSFFSHDNTPSLPNLPETITHQTHPNLNNNENLFLVPKPEHPLNHLDLPPLEQFLPIQQPFNFFPQYLPPPPPPPFESFNRLPQLISHHEQPSTRKRPHHSETTTTSLPPSFRGKSPSSLIPQSQLARQRRQKLSEKTRCLQKLMPWDKKMDQATLLEEAFKYVKFLKAQHSVLQSMPPYSTTNYGGGNTGTGAGGVFGDLEMLNRNQALQVLVNSPVAQTKLCSQGYCVFSMEQFSLLRKLSERRQLQQQQQKNFLSFSDHGSSKTFFH 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04854 302 PANTHER TRANSCRIPTION FACTOR BHLH117 15 288 - -
Tsu02g04854 302 Gene3D - 154 210 IPR036638 GO:0046983
Tsu02g04854 302 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 15 288 IPR045843 GO:0003700|GO:0006355
Tsu02g04854 302 MobiDBLite consensus disorder prediction 121 165 - -
Tsu02g04854 302 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Tsu02g04854 302 SMART finulus 156 205 IPR011598 GO:0046983
Tsu02g04854 302 MobiDBLite consensus disorder prediction 135 161 - -
Tsu02g04854 302 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 208 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04854 Tsu-Chr2 57665296 57666204 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04854 162 275 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G22100 45.614 9.30e-25 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu02g04854 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04854 - - cam:101498441 306.605